Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30823
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             53   2e-07
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = +1

Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
           MVR+NVL+DAL SI NAEKRGKRQV IRP SK  + F
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKF 37



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNKCGVISPR 395
           KVIVKFLTVMMKH        V   R G++V    +G L+  GV+  R
Sbjct: 32  KVIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVVVTR 71


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +3

Query: 375 CGVISPRFDVPINDIERW-TNLLPSRQF 455
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,283
Number of Sequences: 59808
Number of extensions: 287441
Number of successful extensions: 1283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)