Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30823
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   155   3e-38
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  155 bits (375), Expect = 3e-38
 Identities = 73/90 (81%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
 Frame = +3

Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 434
           KVIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK  VISPR ++ +ND+E++TN
Sbjct: 32  KVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYTN 91

Query: 435 -LLPSRQFGYLVLTTSGGIMDHEEARENTL 521
            LLPSRQFGYL+LTTS GIMDHEEAR   L
Sbjct: 92  TLLPSRQFGYLILTTSAGIMDHEEARRKHL 121



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +1

Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SK  + F
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRF 37



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +2

Query: 503 SQREHLGGKILGFFF 547
           ++R+HLGGKILGFFF
Sbjct: 116 ARRKHLGGKILGFFF 130


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +2

Query: 446 TTVWL-PSPYNKWW 484
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 315 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 434
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,547
Number of Sequences: 27780
Number of extensions: 220547
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)