Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30823
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 40  QEKACASKGEDDEGIDIRVK*KIYTIKSQFGSLRSAS*ILAMVRMNVLSDALKSIHNAEK 219
           +   C+       G    +K  +    + FGS+  A  I+ ++ +        SI NAE+
Sbjct: 168 ENNTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAER 227

Query: 220 RGKR 231
           RG R
Sbjct: 228 RGYR 231


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 338 ASSVIINDFKLSDVTVLHHH 279
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 478 VVASWTMKKPERTPWRKNFRLLFLSLLNTRQNVRKKKK 591
           ++ +W  + P      +  R +FL  L T   +R+ KK
Sbjct: 316 IIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKK 353



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 229 FSLAFQHYV*ILRRHSIRSYAPWLRF 152
           F LAF   + +  ++ I     WLRF
Sbjct: 56  FGLAFVQLINVNEKNQIMKSNVWLRF 81


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 514 FSLASSWSMMPPLVV 470
           +SLASSW  + PL +
Sbjct: 434 YSLASSWPALVPLAL 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,351
Number of Sequences: 438
Number of extensions: 2539
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)