Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30823
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 150 6e-37
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 150 6e-37
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 150 6e-37
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 149 2e-36
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 146 1e-35
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 90 9e-19
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 89 2e-18
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 31 0.44
At3g15530.2 68416.m01969 expressed protein 29 1.8
At3g15530.1 68416.m01968 expressed protein 29 1.8
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD... 29 3.1
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 3.1
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 28 5.4
At1g16630.1 68414.m01992 expressed protein 28 5.4
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 27 9.4
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 150 bits (364), Expect = 6e-37
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 32 KVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFGY+VLTTS GIMDHEEAR +
Sbjct: 92 RLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR++VL+DALKS++NAEKRGKRQV+IRP SK + F
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 37
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 150 bits (364), Expect = 6e-37
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 32 KVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFGY+VLTTS GIMDHEEAR +
Sbjct: 92 RLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR++VL+DALKS++NAEKRGKRQV+IRP SK + F
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 37
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 150 bits (364), Expect = 6e-37
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 32 KVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFGY+VLTTS GIMDHEEAR +
Sbjct: 92 RLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR++VL+DALKS++NAEKRGKRQV+IRP SK + F
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 37
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 149 bits (360), Expect = 2e-36
Identities = 69/90 (76%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 32 KVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFG++VLTTS GIMDHEEAR +
Sbjct: 92 RLLPSRQFGFIVLTTSAGIMDHEEARRKNV 121
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR++VL+D LKS++NAEKRGKRQV+IRP SK + F
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKF 37
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 146 bits (354), Expect = 1e-35
Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 KVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT- 431
KVI+KFLTVM KHGYI EFE VDDHR+GKIVV L GRLN CGVISPR+D+ + +IE WT
Sbjct: 38 KVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTA 97
Query: 432 NLLPSRQFGYLVLTTSGGIMDHEEARENTL 521
LLPSRQFGY+VLTTS GIMDHEEAR+ +
Sbjct: 98 KLLPSRQFGYIVLTTSAGIMDHEEARKKNV 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 163 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
MVR +VL+D LKS+ NAEK+GKRQV+IRP SK + F
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKF 43
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 90.2 bits (214), Expect = 9e-19
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 434
V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R DV +IE++T
Sbjct: 32 VMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTER 91
Query: 435 LLPSRQFGYLVLTTSGGIMDHEEA 506
LP+RQ+GY+V+TT GI+DHEEA
Sbjct: 92 TLPTRQWGYVVITTPDGILDHEEA 115
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 178 VLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
+L+DAL++I NAE+RGK V ++P S SF
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSF 36
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 89.4 bits (212), Expect = 2e-18
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 434
V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R DV N+I ++T
Sbjct: 32 VMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTER 91
Query: 435 LLPSRQFGYLVLTTSGGIMDHEEA 506
LP+RQ+GY+V+TT GI+DHEEA
Sbjct: 92 TLPTRQWGYIVITTPDGILDHEEA 115
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 178 VLSDALKSIHNAEKRGKRQVLIRPCSKSSLSF 273
+L+DAL++I NAEKRGK V ++P S SF
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSF 36
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 31.5 bits (68), Expect = 0.44
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 228 KTSPHQALFKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPR 395
KT HQ +I L ++ K IG F+I DH G + V+ LTG L + + S +
Sbjct: 187 KTEQHQDHSNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNK 246
Query: 396 FDVPINDIER 425
+ D+E+
Sbjct: 247 ERITEEDLEK 256
>At3g15530.2 68416.m01969 expressed protein
Length = 288
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -3
Query: 105 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 1
LLF+ + +SL+ + F + FFL+SFF +GA+ + A
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66
>At3g15530.1 68416.m01968 expressed protein
Length = 288
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -3
Query: 105 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 1
LLF+ + +SL+ + F + FFL+SFF +GA+ + A
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66
>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 296
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -1
Query: 272 KLNDDFEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 156
+L +DF++G ++ + +F + + KASLN + R +AK
Sbjct: 198 QLLNDFKEGTVKEKNWAKFMSAYVVSKASLNGYTRVLAK 236
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 261 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 425
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 454 LVT*SLQQVVASWTMKKPERTPWRKNFRLLFLSLLNTRQNVRKKKK 591
+V+ LQ+ +AS +K +R W +S+ N+RQN+RK K
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVK 46
>At1g16630.1 68414.m01992 expressed protein
Length = 845
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +3
Query: 312 EIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIM 491
E+ ++ GK+ + + ++ I D +N ER++ L G G
Sbjct: 508 EVEQENEEGKVNLEIVDECDEQAEIKIATDTEVNGGERYSESLSEEGHGGQETDVVEGQE 567
Query: 492 DHEEARENTLEE 527
++EE +N +EE
Sbjct: 568 EYEENDQNNMEE 579
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 550 LEKEA*NFSSKVFSLASSWSMMPPLVVRTR 461
L+K + SS + +L+S+W+ PPL V+ R
Sbjct: 396 LKKTVIHSSSLLSNLSSTWTSKPPLAVKYR 425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,307
Number of Sequences: 28952
Number of extensions: 210790
Number of successful extensions: 492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -