Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30821
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    31   0.22 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   4.7  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.2  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.2  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 357 ASRKPITKSFKKCHVGMTNATYFLKCDIPFPRICLV 464
           A R+ IT+SF+KC  G+  AT  +   + FP I  V
Sbjct: 330 AQRRSITESFRKCQSGILFATDVVARGMDFPNITQV 365


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 544 CFNDYFSEITGFSSCQYNLHFVICLKYNFRTRVYKLKELYKQIKMPYVKY 693
           C N  F +    S+C  NL     L YNF      L   Y+ + + ++ +
Sbjct: 729 CHNSEFKDPINLSNCLRNLLEKQLLSYNFTDWFASLGSEYENVYVKFISH 778


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 440 TISSDMSRLNEC*HNQSTIKPMA*NNFAFHKYYLDALMIIFLKLL 574
           T+SS ++ LNE    Q +I  +A +   FHK Y D ++ I+L+ L
Sbjct: 7   TVSSKLATLNE---TQESITGIA-HWVMFHKRYADEIVQIWLEAL 47


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 53  LCCHCYLLSDC*FFIK 6
           +C HC L+S+C FF K
Sbjct: 679 ICDHCSLVSECLFFQK 694


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 49  QSPQVIITNNLTINNDRLSTVRKRTFGSKRNEGAVRDARFD 171
           QSP  + T+   + N      +K  FGSK+    + D+  +
Sbjct: 144 QSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVINDSNVE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,006
Number of Sequences: 5004
Number of extensions: 58669
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)