Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30821
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    31   1.1  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    31   1.1  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   7.7  

>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 170 SNLASRTAPSFRLLPKVRLRTV--ESLSLLIVKLFVIITCGLCCHCYLLSD 24
           SN+ S TA   ++L   +  T+  E LSL ++  +++  CG  CH  LL+D
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLND 274


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 170 SNLASRTAPSFRLLPKVRLRTV--ESLSLLIVKLFVIITCGLCCHCYLLSD 24
           SN+ S TA   ++L   +  T+  E LSL ++  +++  CG  CH  LL+D
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLND 274


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
           protein.
          Length = 1141

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 170 SNLASRTAPSFRLLPKVRLRTV--ESLSLLIVKLFVIITCGLCCHCYLLSD 24
           SN+ S TA   ++L   +  T+  E LSL ++  +++  CG  CH  LL+D
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLND 274


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 204 GNRIERVIGRSVEPCVPHRALVPLAPKSTLAYSGKSIV 91
           G+ I  + GR+V P +PH  LV +  +  + Y GK +V
Sbjct: 613 GDTIVELDGRNVRP-IPHTQLVDMLRERPIGYRGKLVV 649


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 635 VRKLYFKHITKCKLY*QEENPVISEK*SLKHLNNIYEMQNCFKPS 501
           V+K+++ HI   K   ++ NPVI E    K++   Y+  +  KP+
Sbjct: 338 VKKIFYVHIEAAKWALKKVNPVIEEIKKAKNIRAEYQSSDDGKPN 382


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 326 SEMKIINLRTSISQTHYQIIQKMSCRNDKCHLFFKVRYTISSDMSRLNEC 475
           SE+++ NL   +SQ   ++  K + R  KCH+   +  T  S M   + C
Sbjct: 365 SELQL-NLSKKVSQLRQKVGDKQAKRRSKCHVSVDLLDTDFSSMMSKSSC 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,066
Number of Sequences: 27780
Number of extensions: 323839
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)