Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30821
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.41 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 174 SVEPCVPHRALVPLAPKSTLAYS 106
           S+E  V H  +VPL  + TL +S
Sbjct: 367 SIEKMVDHETMVPLGERQTLMFS 389


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 490 TLIMLTFIETRHIRGNGISHFKK*VAFVIP 401
           T+ +L     R I+G G    KK V FVIP
Sbjct: 203 TVFILNNEIIRSIQGTGTIILKKTVCFVIP 232


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 646 YKLGFGNYISNILQNVNYIDK 584
           Y   + NY   +  N+NYI++
Sbjct: 97  YNNNYNNYNKKLYYNINYIEQ 117


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 646 YKLGFGNYISNILQNVNYIDK 584
           YK  + N    +  N+NYI++
Sbjct: 96  YKYNYNNNCKKLYYNINYIEQ 116


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 205 PAVAPLPHHQSDLKFGSRSQGHLL 276
           P   P  HH ++ K G+   G+L+
Sbjct: 507 PQHLPRIHHDAEWKVGNHEDGYLI 530


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 205 PAVAPLPHHQSDLKFGSRSQGHLL 276
           P   P  HH ++ K G+   G+L+
Sbjct: 422 PQHLPRIHHDAEWKVGNHEDGYLI 445


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 205 PAVAPLPHHQSDLKFGSRSQGHLL 276
           P   P  HH ++ K G+   G+L+
Sbjct: 741 PQHLPRIHHDAEWKVGNHEDGYLI 764


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 471 NVNIIKVQ*NRWLETILHFI 530
           NVN++K +  R++ T LH +
Sbjct: 35  NVNLLKNRTGRYMFTYLHLL 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,921
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)