Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30821
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65000.1 68414.m07367 expressed protein                             29   2.3  
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    29   2.3  
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    29   2.3  
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    28   7.1  
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    27   9.4  
At4g19240.1 68417.m02838 expressed protein                             27   9.4  

>At1g65000.1 68414.m07367 expressed protein
          Length = 83

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 541 RCFNDYFSEITGFSSCQYNLHFVICLKYNFRTRVYKLK 654
           RC   Y       SSC+++  F +C +++ + R Y+LK
Sbjct: 12  RCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYELK 49


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 241 DHFGGEGEARRQGKSYRARYW*ISRTLRPAPRPRS 137
           D +G  G  R +G+ YR+R     R  RP  RP S
Sbjct: 254 DRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSS 288


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 241 DHFGGEGEARRQGKSYRARYW*ISRTLRPAPRPRS 137
           D +G  G  R +G+ YR+R     R  RP  RP S
Sbjct: 254 DRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSS 288


>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 218 GATAGEIVSSALLVDQ-SNLASRTAPSFRLLPKVRLRTVESLS 93
           G T     +S +L  Q S  ASRT P  R LP++R  +V SLS
Sbjct: 86  GVTENLAGTSKVLPKQVSTTASRTDPVRRSLPELRKSSVSSLS 128


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 202 SPAVAPLPHHQSDLKFGSRSQGH 270
           SP V+ L HH  D+ FG +  GH
Sbjct: 524 SPHVSSLIHHWIDITFGYKMSGH 546


>At4g19240.1 68417.m02838 expressed protein 
          Length = 366

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 101 SLSLLIVKLFVIITCGLCCHCY 36
           +L  LI +LFV+ TC LCC  +
Sbjct: 324 NLCHLIRRLFVLWTCNLCCRLH 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,578
Number of Sequences: 28952
Number of extensions: 287862
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)