Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30820
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   0.66 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.5  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   1.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.0  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 189 LLILAVFGQIIFMVVADFVY 248
           L IL VFG+ + + V D+V+
Sbjct: 128 LAILGVFGEFVLVFVPDYVF 147


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 501 VFTGTLLPYSSPKRDRMTKASPRNTEPRRSPS 406
           + +  +LP  SP RD+  +     +  +RSPS
Sbjct: 674 LMSNNILPPESPTRDKSKQNEKSPSPQQRSPS 705


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 489 TLLPYSSPKRDRMTKASPRNTEPRRSPSAVR*GMAA 382
           T LP+ S         SP+NT P   P  V  GM +
Sbjct: 72  TALPHLSGDMTHGASISPQNTPPAGYPMDVPHGMGS 107


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 489 TLLPYSSPKRDRMTKASPRNTEPRRSPSAVR*GMAA 382
           T LP+ S         SP+NT P   P  V  GM +
Sbjct: 72  TALPHLSGDMTHGASISPQNTPPAGYPMDVPHGMGS 107


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 377 DNAAIPYLTALGDLLGSVFLGLAFVILSLFG 469
           DN ++PY+     L+G   LG   + L L G
Sbjct: 903 DNISMPYIGYQILLMGGTILGPGTIFLMLVG 933


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 377 DNAAIPYLTALGDLLGSVFLGLAFVILSLFG 469
           DN ++PY+     L+G   LG   + L L G
Sbjct: 903 DNISMPYIGYQILLMGGTILGPGTIFLMLVG 933


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 377 DNAAIPYLTALGDLLGSVFLGLAFVILSLFG 469
           DN ++PY+     L+G   LG   + L L G
Sbjct: 903 DNISMPYIGYQILLMGGTILGPGTIFLMLVG 933


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 377 DNAAIPYLTALGDLLGSVFLGLAFVILSLFG 469
           DN ++PY+     L+G   LG   + L L G
Sbjct: 903 DNISMPYIGYQILLMGGTILGPGTIFLMLVG 933


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,981
Number of Sequences: 336
Number of extensions: 2301
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)