Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30820
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 31 0.54
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 31 0.95
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 1.3
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 30 1.3
10_08_1037 - 22477358-22478752 29 3.8
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651... 29 3.8
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39... 29 3.8
12_01_0545 - 4302369-4302926 28 6.7
11_05_0089 + 18975637-18977439 28 6.7
07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426... 28 6.7
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 28 6.7
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 28 6.7
08_02_0684 + 20031661-20031957,20032094-20032512,20033600-200336... 27 8.9
03_06_0087 - 31551825-31553363 27 8.9
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 27 8.9
01_03_0201 + 13758227-13758760,13758784-13759452 27 8.9
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 8.9
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -1
Query: 254 PLVHEVRDHHEDYLPEDGQDQQHASHLRRGRSKEQSLPRPLND-LSVLRQ-DPGDGGLVE 81
P H + +L +D + H +R K+ L L + L++L+Q D G
Sbjct: 724 PGSHMTEKSLQKWLEQDLEVMVHVHEVRNEYEKQSQLRAALGEELAILKQEDVMSGAASP 783
Query: 80 VRGQPGRLHAHQVPPNAVHDRLEHL 6
RG+ G A+ + PNA R+ L
Sbjct: 784 PRGKNGNSRANTLSPNARQARIASL 808
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -1
Query: 176 LRRGRSKEQSLPRPLNDLSVLRQDPGDGGLVEVRGQPGRLHAHQVP 39
LRR R + S +PL S+ R GDGGL V G A +VP
Sbjct: 14 LRRRRGRTASAYQPLRSSSLARHPGGDGGLEVVPGPFALPAAIRVP 59
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = -1
Query: 257 PPLVHEVRDHHEDYLPEDGQDQQHASHLRRGRSKEQSLPRPLN--DLSVLRQDPGDGGLV 84
PP H+ + H D + + QH L +++Q P+P +V ++ G G V
Sbjct: 145 PPPQHQQQQQHLDAMQDLQHQHQHQQQLPMSYNQQQLPPQPPQQPQATVKLENGGSTGGV 204
Query: 83 EVR---GQPGRLHAHQVPPNAVHDRLE 12
++ GQP + Q+ NA + ++E
Sbjct: 205 KLEPQMGQPDQNSTAQMMRNASNVKIE 231
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +1
Query: 373 PRQCRHPLPHGARRPPRLRVPGTRLRHPVPLRT 471
PR H L AR RLR+P LRH V LRT
Sbjct: 310 PRPHPHLLHAAARLAYRLRLPSLALRHYVALRT 342
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = -1
Query: 245 HEVRDHHEDYLPEDGQDQQHASHLRRGRSKEQSLPRPLN-DLSVLRQDPGDGGLVEVRGQ 69
H H D LP QH H R + P+P + L +R P + +
Sbjct: 228 HSPAAHRGDPLPASPPQPQHQHHPHRPLPPQHQQPKPPSMRLQKIRPPP----ISTPVAR 283
Query: 68 PGRLHAHQVP-PN 33
P +H HQ+P PN
Sbjct: 284 PPPVHNHQIPNPN 296
>05_05_0185 +
23064249-23064448,23064881-23064950,23065082-23065120,
23065639-23066067,23067322-23067627
Length = 347
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 424 AEEVS--ERREVGDGGIVGVLLPLPHEVDHDVGQVKEQHH 311
A EVS ERRE G G + P H +HD EQ+H
Sbjct: 40 AHEVSAGERRERGGGSSTSSVSPPMHTRNHDTSHDIEQNH 79
>03_01_0047 +
391689-392738,392832-392999,393091-393195,393529-393611,
393899-394364
Length = 623
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 349 LHVEEEEGPRQCRHPLPHGARRPPRLRVPGTRLRHP 456
LH +GPR R P+ HG RR +L TR P
Sbjct: 491 LHRPSSDGPR--RRPMAHGLRRCRQLACARTRAEKP 524
>12_01_0545 - 4302369-4302926
Length = 185
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 361 LPHEV-DHDVGQVKEQHHLQQGAREVRDAERELDGD 257
+P EV D VG+ + HH + E+ + + LDGD
Sbjct: 15 VPPEVEDARVGEDADDHHREDAEEELAERDAALDGD 50
>11_05_0089 + 18975637-18977439
Length = 600
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 245 HEVRDHHEDYLPEDGQDQQHASHLRRGRSKEQSLPRPLNDLSVLR 111
H + +D L +DG+ A + RR +E S+PR L + LR
Sbjct: 204 HADDEDDDDVLSDDGKKDPMAVYRRRFEPQEYSVPRGLFACAALR 248
>07_03_0232 +
15539586-15539696,15541524-15541727,15542612-15542674,
15542896-15543027,15543766-15543889,15545052-15545365,
15545538-15545614,15545716-15545851,15546352-15546555,
15546630-15546689
Length = 474
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 155 LWNDRGEGGSHAADPGRLRADNLHGGRGLRVPGAVTIQFAFGI 283
+W++ G+GG A+ GR+ A + GG G V++ G+
Sbjct: 37 VWSEWGDGGGVASVGGRVVAPGVDGGVASVSGGVVSVGIGGGV 79
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 352 EVDHDVG---QVKEQHHLQQGAREVRDAERELDGDR 254
E +HDVG + KE +H + +R RD+ER DG R
Sbjct: 17 EREHDVGVSRRSKEHYHHRHPSRH-RDSERRRDGGR 51
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = -3
Query: 528 GEGDTYSLL--VFTGTLLPY 475
GEG+ Y +L +F GTLLPY
Sbjct: 196 GEGEPYHMLLVIFAGTLLPY 215
>08_02_0684 +
20031661-20031957,20032094-20032512,20033600-20033606,
20033905-20033982,20034086-20034121
Length = 278
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 233 RGLRVPGAVTIQFAFGITYLTCA 301
RGL V GAV++ A G +L CA
Sbjct: 13 RGLLVSGAVSVAAALGALWLACA 35
>03_06_0087 - 31551825-31553363
Length = 512
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 257 PPLVHEVRDHHEDYLPEDGQDQQHASHLRRGRSKEQSLPRP 135
PP+V +RD +E + G+D A+ +R RS L P
Sbjct: 56 PPVVGAIRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLNMP 96
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = -1
Query: 254 PLVHEVRDHHEDYLPED-----GQDQQHASHLRRGRS 159
P + RDH +DY P + GQD++H H GRS
Sbjct: 184 PARRDYRDHRDDYSPGESLSPHGQDKRH--HRSNGRS 218
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 132 EWPWKTLFFGTTAAKVARMLLILAVFGQIIFMVVA 236
+WP + G+TAA + ++L+L +G + V A
Sbjct: 327 QWPGQAETAGSTAASLMEVVLVLKFWGNTLLAVAA 361
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 480 PYSSPKRDRMTKASPRNTE-PRRSP 409
P SP+ R K SPR+T+ PR SP
Sbjct: 199 PRGSPRDSRSPKGSPRDTQSPRGSP 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,732
Number of Sequences: 37544
Number of extensions: 318463
Number of successful extensions: 1223
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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