Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30820
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33365| Best HMM Match : MgtE (HMM E-Value=1.6e-07)                  62   3e-10
SB_13362| Best HMM Match : Phage_T4_Ndd (HMM E-Value=0.82)             60   1e-09
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)                   31   0.74 
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 29   3.0  
SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27)                      28   5.2  
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)             28   6.9  
SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)                   27   9.1  

>SB_33365| Best HMM Match : MgtE (HMM E-Value=1.6e-07)
          Length = 411

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 32/73 (43%), Positives = 37/73 (50%)
 Frame = +2

Query: 251 GAVTIQFAFGITYLTCAXXXXXXXXXXAYIVIHFMWKRKKDPDNAAIPYLTALGDLLGSV 430
           G  +    F   YL             A  ++H+MWKR KDPDN  IPYLTALGDLLG+ 
Sbjct: 331 GHTSFTAVFTTFYLLVGVLQVSFLLLLANWLVHWMWKRGKDPDNYTIPYLTALGDLLGTA 390

Query: 431 FLGLAFVILSLFG 469
            L  AF  L   G
Sbjct: 391 LLAAAFHFLWFIG 403



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 31/66 (46%), Positives = 43/66 (65%)
 Frame = +3

Query: 30  GIGGNLVCVQSSRLATHLHQTAIPGILPENTKIIEWPWKTLFFGTTAAKVARMLLILAVF 209
           G+GGNLV VQ+SRL+THLHQ   PG LP+ +K  +    T F     AK  R+L++L V 
Sbjct: 258 GVGGNLVAVQASRLSTHLHQLGRPGRLPKGSK-YKGCIDTFFGPGADAKTVRVLMLLVVP 316

Query: 210 GQIIFM 227
           G ++F+
Sbjct: 317 GHLVFL 322


>SB_13362| Best HMM Match : Phage_T4_Ndd (HMM E-Value=0.82)
          Length = 294

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +3

Query: 9   VFQPIVNGIGGNLVCVQSSRLATHLHQTAIPGILPENTK 125
           VF P++NG+GGNLV VQ+SRL+THLHQ   PG LP+ +K
Sbjct: 19  VFSPVMNGVGGNLVAVQASRLSTHLHQLGRPGRLPKGSK 57


>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
          Length = 524

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 373 PRQCRHPLPHGARRPP-RLRVPGTRLRHP 456
           PR+ RHP P  +R PP R R P  R RHP
Sbjct: 470 PRRSRHP-PRRSRHPPRRSRHPPRRSRHP 497


>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -2

Query: 241 KSATTMKIICPKTARISSMRATFAA-----VVPKNKVFQGHSMILVFSGRIPGM 95
           ++ +T +   P+TAR +  R   +A     V   + +  GH + + FSGRIPG+
Sbjct: 356 RAGSTPRDAFPQTARATDERGCGSAKSNLQVTSLDPMISGHQLRMRFSGRIPGL 409


>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -1

Query: 203 GQDQQHASHLRRGRSKEQSLPRPLNDLSVLRQDPGDGGLVEVRGQPGRLHAHQVPPNAVH 24
           G     +S +R+ RS   + P P+ +   +  D   G  ++V  +PGR  +  V P  ++
Sbjct: 157 GMGSSMSSIMRKSRSGSLTPPPPVEEQDSVMLDDCMGDSLQVEIRPGRSQSFPVDPQRLN 216

Query: 23  DRL 15
            +L
Sbjct: 217 HQL 219


>SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -2

Query: 367 LPLPHEVDHDVGQVKEQHHLQQGAREVRDAERELDGDRPWYTKSATTMKIICPKTARISS 188
           LPLPHE   ++    +Q   Q+  +E     R    +    T +A   K +C  T  IS 
Sbjct: 94  LPLPHERPEEIVATYQQLPSQEPIKEPPTKRRRTACELASKTANALIQKRVCRDTEAISQ 153

Query: 187 MR 182
            R
Sbjct: 154 SR 155


>SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -2

Query: 232 TTMKIICPKTARISSMRATFAAVVPKNKVFQGHSMILVFSGRIPGMAVWWRCVASRDDCT 53
           T + +  PK A  SS+ A F+AV     +F G + I +    I  MA+ + C       T
Sbjct: 149 TILSLGGPKYANSSSLEAFFSAVGNFLVMFSGSAAIGIAFALISIMAILF-CAICMSHYT 207

Query: 52  HTRFPPM 32
           H    PM
Sbjct: 208 HFNLSPM 214


>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 364 EEGPRQCRHPLPHGARRPPRLRVPGTRLRHPVPLRTG 474
           E+G      PL  G +RPPR R    + R P P   G
Sbjct: 57  EKGEGSEEDPLVEGGQRPPRERREHRQWRRPFPTEEG 93


>SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27)
          Length = 275

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -2

Query: 232 TTMKIICPKTARISSMRATFAAVVPKNKVFQGHSMILVFSGRIPGMAVWWRCVASRDDCT 53
           T + +  PK A  SS+ A F+AV     +F G + I +    I  MA+ + C       T
Sbjct: 50  TILSLGGPKYANSSSLEAFFSAVGNFLVMFSGSAAIGIAFALISIMAILF-CAICMSHYT 108

Query: 52  HTRFPPM 32
           H    PM
Sbjct: 109 HFNLSPM 115


>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 730

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 FGTTAAKVARMLLILAVFGQIIFMVVADFV 245
           FG    KV+R+ L++  F ++IF  + +F+
Sbjct: 159 FGAVLGKVSRLQLLVIGFFEVIFFAINEFI 188


>SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 230 HHEDYLPEDGQDQQ-HASHLRRGRSKEQSLPRPLNDLSVLR 111
           H   +LP+D    Q +A   RR R   Q +P PL  + VLR
Sbjct: 401 HDPQWLPDDHPAYQGYALDGRRNRVSIQEVPTPLKYMDVLR 441


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 51   CVQSSRLATHLHQTAIPGILPENTKIIEWPW 143
            C+QS+   +  H+   P    E++   EWPW
Sbjct: 2514 CIQSASPLSSTHERKTPESFSESSTNGEWPW 2544


>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
          Length = 341

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 253 PWYTKSATTMKIICP 209
           PWYT+    +KIICP
Sbjct: 253 PWYTELIKALKIICP 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,785
Number of Sequences: 59808
Number of extensions: 331352
Number of successful extensions: 1062
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)