Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30820
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar ...    31   0.80 
At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar ...    31   0.80 
At5g13660.1 68418.m01590 expressed protein                             30   1.1  
At2g31020.1 68415.m03782 oxysterol-binding family protein simila...    29   2.4  
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    29   2.4  
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    29   2.4  
At3g61690.1 68416.m06913 expressed protein                             29   3.2  
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica...    29   3.2  
At3g52410.1 68416.m05764 hypothetical protein contains Pfam prof...    28   5.6  
At5g47340.1 68418.m05835 palmitoyl protein thioesterase family p...    27   7.4  
At3g10980.1 68416.m01325 expressed protein                             27   7.4  

>At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar to
           aldehyde dehydrogenase [Arabidopsis thaliana]
           gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein; identical
           to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
           aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:17065876
          Length = 390

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 96  IPGILPENTKIIEWPWKTLFFGTTAAKVARMLLILA 203
           I G +PE T +++  W  +FF T  A+VAR+++  A
Sbjct: 237 IEGGVPETTALLDQKWDKIFF-TGGARVARIIMAAA 271


>At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar to
           aldehyde dehydrogenase [Arabidopsis thaliana]
           gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein; identical
           to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
           aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:17065876
          Length = 550

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 96  IPGILPENTKIIEWPWKTLFFGTTAAKVARMLLILA 203
           I G +PE T +++  W  +FF T  A+VAR+++  A
Sbjct: 237 IEGGVPETTALLDQKWDKIFF-TGGARVARIIMAAA 271


>At5g13660.1 68418.m01590 expressed protein 
          Length = 537

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 340 RDPLHVEEEEGPR-QCRHPLPHGARRPPRLRVP 435
           +DPLH+E EE    +CR+P P+ + R   L VP
Sbjct: 351 KDPLHIEAEENMSFECRNP-PYASPRVDTLLVP 382


>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 760

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 347 HFMWKRKKDPDNAAIPYLTALGDLLGSVFLGL 442
           H +WKR K P+N     LT  G  L  +  GL
Sbjct: 637 HLLWKRNKQPENPTKYNLTRFGITLNELTPGL 668


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 358 EEEEGPRQCRHPLPHGARRPPRLRVPGTRLRHPVP 462
           EEE  P+    P PH  R PP + +P   +  P P
Sbjct: 36  EEENQPKTSPTPPPHWMRYPPTVIIPHQMMYAPPP 70


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 358 EEEEGPRQCRHPLPHGARRPPRLRVPGTRLRHPVP 462
           EEE  P+    P PH  R PP + +P   +  P P
Sbjct: 36  EEENQPKTSPTPPPHWMRYPPTVIIPHQMMYAPPP 70


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 87  QTAIPGILPENTKIIEWPWKT 149
           Q  +PGI+P N   IE PW T
Sbjct: 647 QRNMPGIVPSNLPFIEAPWST 667


>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
           to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
           (5320), 1865-1868 (1997))
          Length = 933

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 140 RPLNDLSVLRQDPGDGGLVEVRGQPGRLHAHQVPPNAV 27
           RP  D S      G+     V  Q G+ H   VPPNAV
Sbjct: 654 RPAVDSSFQHSGAGNNNTQSVLEQLGQSHTSNVPPNAV 691


>At3g52410.1 68416.m05764 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 206

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 139 GHSMILVFSGRIPGMAVWW 83
           G S + VF G+I G+  WW
Sbjct: 17  GKSRVYVFGGKITGLRFWW 35


>At5g47340.1 68418.m05835 palmitoyl protein thioesterase family
           protein 
          Length = 317

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 400 EVGDGGIVGVLLPLPHEVDHDVGQVKEQHHLQQG 299
           E+G+G I  + LPL  + +     VKE   L QG
Sbjct: 62  EIGNGVINSMFLPLTQQAEIACENVKEMKELSQG 95


>At3g10980.1 68416.m01325 expressed protein 
          Length = 557

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 434 LGLAFVILSLFGLEYGNNVPVKTNKEYVSPSPN 532
           LG++ ++L +FGL YG    ++  K +  PS N
Sbjct: 401 LGISGILLCVFGLLYGGFWRIQMRKRFKLPSYN 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,612,647
Number of Sequences: 28952
Number of extensions: 224355
Number of successful extensions: 763
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)