Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30817X
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.29 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   3.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    25   8.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   8.3  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 434 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 303
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 483 SIKLITSNKRMWWMFATQSC 424
           S+  +T+N  +WW++A   C
Sbjct: 390 SLTTVTTNTNIWWVWAESRC 409


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 313 SLTRLDTMLRVNLFLRSPPPRAKLLNS 393
           SL+ L   LR +  +R  PP +K++NS
Sbjct: 685 SLSPLSYRLRKSKHIRESPPSSKVINS 711


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 1   IGYQQERTKTIKNEIDHRCSSRPCGYRHRCP 93
           +GY+ +  +        RC+  PC YR+  P
Sbjct: 235 VGYKPKCNRIFFTRNGRRCAELPCTYRNLYP 265


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 280 TLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 396
           TLTA+L+      T L+T L+  +    PP    L++S+
Sbjct: 139 TLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,073
Number of Sequences: 5004
Number of extensions: 34058
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)