Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30817X
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_9160| Best HMM Match : EGF (HMM E-Value=0.0019)                     27   6.4  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   6.4  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 27   8.5  
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)           27   8.5  

>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 92  PPTEDYPKIVRSEFDASPDGAY 157
           PPT+DY +  RS+ D S DG Y
Sbjct: 17  PPTKDYDRRSRSQDDDSDDGCY 38


>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 174 LPTASCVRNW*AEGGSRRRQQASRYCCVRGSYSYTNT-DGKPETITYFADETGYHAQGES 350
           +PT      W     + R+    R   VRG +S  NT   K + I  F  E G   + ES
Sbjct: 9   VPTIFNKSKWDTSHTNNRQPSPPRLILVRGDFSAQNTSSSKAQEIRTFLKEQGADLKEES 68

Query: 351 I 353
           I
Sbjct: 69  I 69


>SB_9160| Best HMM Match : EGF (HMM E-Value=0.0019)
          Length = 497

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   GYQQERTKTIKNE--IDHRCSSRPCGYRHRCPPYRGLP 111
           GY  + T+  +N     + CSS PCG    C P  GLP
Sbjct: 102 GYTYKGTEINRNRDTFQNGCSSNPCGNNEICMP-GGLP 138


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 256 CVEATVTRTLTANLKPLRTSLTRLDT 333
           C   T    +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 213 GGSRRRQQASRYCC 254
           GGSRRR   S++CC
Sbjct: 97  GGSRRRNSKSKFCC 110


>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
          Length = 788

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 187 RAYETGELKEALDDDNKPHVIVACVEATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSP 366
           R  E  EL+ ++DD  + +  +  V+  +   +TA  K L +  TRL+T      ++++P
Sbjct: 533 RENEIAELRTSIDDALRDYEDLMGVKVALDMEITAYRKLLESEETRLNT-----YYIKAP 587

Query: 367 P 369
           P
Sbjct: 588 P 588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,238
Number of Sequences: 59808
Number of extensions: 295703
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)