Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30817X
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    41   6e-06
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.4  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   5.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 41.1 bits (92), Expect = 6e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +3

Query: 258 RGSYSYTNTDGKPETITYFADETGYHAQGESIP 356
           +GS SYT  DG+  +ITY ADE G+  QG  IP
Sbjct: 72  QGSDSYTAPDGQQVSITYVADENGFQVQGSHIP 104



 Score = 27.5 bits (58), Expect = 0.083
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 IVRSEFDASPDGAYNYNFETSNGI 187
           I   + + + DG Y  NFETSNGI
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGI 52


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 289 ANLKPLRTSLTRLDTMLRVNLFLRS 363
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 289 ANLKPLRTSLTRLDTMLRVNLFLRS 363
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 154 LQLQFRDFQRHRAYETGELKEALDDDNK 237
           L++Q RD Q     E+G  ++ +DD N+
Sbjct: 22  LKIQLRDVQEICKAESGIDQQTVDDINE 49


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 91  GSDDGSHKGESYNDD 47
           GSD  +HK E  ND+
Sbjct: 310 GSDKENHKTEEPNDE 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,707
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)