Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30817X
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   4.0  
At4g24290.2 68417.m03488 expressed protein                             27   5.3  
At4g24290.1 68417.m03487 expressed protein                             27   5.3  
At4g17370.1 68417.m02604 oxidoreductase family protein weak simi...    27   5.3  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   5.3  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 261  GSYSYTNTDGKPETITYFADETGYHAQGESIP 356
            GS++  N +G  E I +FA+E GY    +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 163 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 80
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 163 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 80
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g17370.1 68417.m02604 oxidoreductase family protein weak
           similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC
           1.1.1.18). {Bacillus subtilis}; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 368

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 232 NKPHVIVACVEATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 396
           +KPH ++  VE  +  T+    + L  +  R D +++V L  R  PP AKL+  +
Sbjct: 101 SKPHHVL--VEKPLCTTVADCKQVLEAAKKRSDMVVQVGLEYRYMPPVAKLIEQV 153


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 241 HVIVACVEATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAK-LLNSL 396
           ++++A V+AT       N   L+       +  RV L+L  PPPRA  LLNSL
Sbjct: 126 YIVIANVQAT-----DKNWVELKGKFVIHGSPSRVILYLEGPPPRADILLNSL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,246,093
Number of Sequences: 28952
Number of extensions: 194862
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)