Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30816
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   38   0.006
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       31   0.54 
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        30   0.94 
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.0  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 27   8.8  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             27   8.8  
SB_38623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  27   8.8  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 45  LRAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEE 206
           ++ AG V FR   +  + LL+ +S     W  P G ++PGE    TA+RE +EE
Sbjct: 100 VKRAGCVCFRTELEK-EVLLVSSSKHPDKWVVPAGGIEPGEEPKETAIREVQEE 152


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 45  LRAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEE 206
           ++ AG V FR   +  + LL+ +S     W  P G ++PGE    TA+RE +EE
Sbjct: 65  VKRAGCVCFRTELEK-EVLLVSSSKHPDKWVVPAGGIEPGEEPKETAIREVQEE 117


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 257  LNYEVNGEPKTVVYWL--AKLKNPEQTVTLSSEHQ 355
            L  EV+G+PK VV WL   +L  P   +TL +E Q
Sbjct: 2983 LEVEVSGKPKPVVEWLKDGELVKPSSLMTLETEGQ 3017


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 314 KNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCK 448
           KN E    +  + QD+K +  ++++ + KYED  +   + YE+ K
Sbjct: 77  KNSELEGKVEKQRQDIKRIKREKSEMVDKYEDELEEALDCYEESK 121


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 91   YNSYYCKHPTENIIGHHQKD 150
            +N+ YCKHP   ++G++ +D
Sbjct: 3667 HNNKYCKHPLLVVVGYNSRD 3686


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 174  WMTALRETKEEAGLCEDHLDIYK 242
            W+  L   ++E  LC DHLD  K
Sbjct: 4749 WIAVLNSVQQEYELCSDHLDKVK 4771


>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 535

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 VDPGETDWMTALRETKEEAGL 215
           +DP E DW  +LR T+ E+ +
Sbjct: 61  IDPTERDWKESLRRTRSESDI 81


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 48   RAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEEA 209
            R +  V+ +   ++++F+ +Q     + W  P G V+PG+        E  EEA
Sbjct: 1145 RTSAGVMLQGGKKVLEFVAIQRK-DNNQWAIPGGMVEPGQLVTQALKAEFGEEA 1197


>SB_38623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 VDPGETDWMTALRETKEEAGL 215
           +DP E DW  +LR T+ E+ +
Sbjct: 55  IDPTERDWKESLRRTRSESDI 75


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 280 TQNCCVLVGKA*KS*TDSHPFI*TPRY--EVALIARSTGNIKIRRHETI 420
           ++N CV +G   ++ T+   FI TP Y  E   + +  G +K   H T+
Sbjct: 211 SRNACVKLGLVVRADTNVEEFIPTPDYRTEFPKLFKGLGKMKTEYHTTL 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,052
Number of Sequences: 59808
Number of extensions: 265722
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)