Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30816
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical ... 97 5e-21
U55855-1|AAA98017.1| 188|Caenorhabditis elegans Nudix family pr... 38 0.005
Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical pr... 36 0.022
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 0.83
AF067946-2|AAC17685.1| 223|Caenorhabditis elegans Nudix family ... 30 0.83
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 0.83
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 0.83
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 0.83
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 0.83
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 0.83
Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 28 4.4
DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping... 28 4.4
AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical ... 28 4.4
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 28 4.4
U80023-6|AAG24045.1| 306|Caenorhabditis elegans Serpentine rece... 27 5.8
Z77666-13|CAB01229.2| 315|Caenorhabditis elegans Hypothetical p... 27 7.7
AF125964-7|AAD14750.1| 350|Caenorhabditis elegans Hypothetical ... 27 7.7
>AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical
protein Y37H9A.6 protein.
Length = 138
Score = 97.5 bits (232), Expect = 5e-21
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +3
Query: 45 LRAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEEAGLCED 224
++AAGLVI+R I+FLLLQ SY HHWTPPKGHVDPGE +W A+RETKEEA + ++
Sbjct: 3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 62
Query: 225 HLDIYKDINK 254
L I++D ++
Sbjct: 63 QLTIHEDCHE 72
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/61 (52%), Positives = 43/61 (70%)
Frame = +2
Query: 251 QTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAE 430
+TL YE G+PK+V YWLAKL NP+ V LS EHQ+ KW L++A +I+ Y +M LL +
Sbjct: 72 ETLFYEAKGKPKSVKYWLAKLNNPDD-VQLSHEHQNWKWCELEDAIKIADYAEMGSLLRK 130
Query: 431 F 433
F
Sbjct: 131 F 131
>U55855-1|AAA98017.1| 188|Caenorhabditis elegans Nudix family
protein 3 protein.
Length = 188
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 141 PKGHVDPGETDWMTALRETKEEAGLCEDHLDIY 239
P G +DPGET TALRET EE G+ + ++I+
Sbjct: 35 PGGRMDPGETTTETALRETFEEIGVNAESVEIW 67
>Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical
protein T26E3.2 protein.
Length = 365
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 54 AGLVIFRNYNQIIQFLLLQTSYGEHH--WTPPKGHVDPGETDWMTALRETKEEAGLCEDH 227
A +I RN + LL+Q + W P G V+ GET +RE KEE G D
Sbjct: 76 AAAIILRNQGDDTEVLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVKEETGYSCDV 135
Query: 228 LDI 236
+++
Sbjct: 136 VEL 138
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 239 QRHKQTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 376
++ + L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>AF067946-2|AAC17685.1| 223|Caenorhabditis elegans Nudix family
protein 2 protein.
Length = 223
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 141 PKGHVDPGETDWMTALRETKEEAG 212
P G +D GET A+RE KEE G
Sbjct: 109 PAGLIDAGETAQQAAIRELKEETG 132
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 239 QRHKQTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 376
++ + L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3190 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3235
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 239 QRHKQTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 376
++ + L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 239 QRHKQTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 376
++ + L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 239 QRHKQTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 376
++ + L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3190 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3235
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 239 QRHKQTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 376
++ + L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 212
+L+Q+ + + +W PKG ++ E A+RET EE G
Sbjct: 256 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 294
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 212
+L+Q+ + + +W PKG ++ E A+RET EE G
Sbjct: 279 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 317
>DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping
protein protein.
Length = 770
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 212
+L+Q+ + + +W PKG ++ E A+RET EE G
Sbjct: 240 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 278
>AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 212
+L+Q+ + + +W PKG ++ E A+RET EE G
Sbjct: 256 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 294
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 99 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 212
+L+Q+ + + +W PKG ++ E A+RET EE G
Sbjct: 279 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 317
>U80023-6|AAG24045.1| 306|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 29 protein.
Length = 306
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 34 LCLL*EPQVWLFSEIIIKLYNSYYCKHPTENII 132
LCLL VW+ S I + Y Y + P +N++
Sbjct: 92 LCLLEYNLVWMISSYIFRYYILYVREPPIKNLV 124
>Z77666-13|CAB01229.2| 315|Caenorhabditis elegans Hypothetical
protein K08E7.6 protein.
Length = 315
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Frame = +3
Query: 117 YGEHHWTPPKGHVDPGETDWMTALRE-TKEEAGLCEDHLDIYKDINKL*IMK*TENPKLL 293
Y E W PK DWM+ L E E D D D IM+ T PK
Sbjct: 135 YAEFSWAEPKRRSRGPVPDWMSGLAEIMMSEQDTKADDADSASD-----IMEATYGPKAK 189
Query: 294 CTGWQSLKILNRQSPFHLNTK 356
Q ++ Q HL+ K
Sbjct: 190 RLKLQRTEMQLHQLQLHLDMK 210
>AF125964-7|AAD14750.1| 350|Caenorhabditis elegans Hypothetical
protein W03G1.2 protein.
Length = 350
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 186 LRETKEEAGLCEDHLDIYKDINKL*IMK*TENPKLLCTGWQSLKILNRQSPFHLNT 353
++ET E + DHL++Y+ NK +K KL+ Q L L ++ H T
Sbjct: 233 MKETDEAITVSTDHLEMYR--NKKLSLKSIPPTKLVLNELQPLVELKKRDEVHFET 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,625,905
Number of Sequences: 27780
Number of extensions: 209471
Number of successful extensions: 580
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -