Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30814
         (796 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55537 Cluster: PREDICTED: similar to CG16707-PC...    44   0.004
UniRef50_Q9VT37 Cluster: CG16707-PC, isoform C; n=6; Diptera|Rep...    36   1.2  

>UniRef50_UPI0000D55537 Cluster: PREDICTED: similar to CG16707-PC,
           isoform C; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG16707-PC, isoform C - Tribolium castaneum
          Length = 189

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +1

Query: 34  RAFDGPSFVXXXXXXXXXXXXXFMGFKYYKNHTERNYHTL 153
           R FDGPSFV             F+ FK+YK  TE NYHTL
Sbjct: 150 RKFDGPSFVGGIVLASGLMAIGFVAFKFYKARTELNYHTL 189


>UniRef50_Q9VT37 Cluster: CG16707-PC, isoform C; n=6; Diptera|Rep:
           CG16707-PC, isoform C - Drosophila melanogaster (Fruit
           fly)
          Length = 183

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 40  FDGPSFVXXXXXXXXXXXXXFMGFKYYKNHTERNYHTL 153
           FDG SF+              + +K+YK   ERNYHTL
Sbjct: 146 FDGSSFIGGIVLTLGLLAIGLVAYKFYKARNERNYHTL 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,295,044
Number of Sequences: 1657284
Number of extensions: 13052835
Number of successful extensions: 23693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23691
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)