Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30814
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   4.1  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    26   7.1  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   7.1  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 746 NELFSNKDTEIGDSKTCLCQNG 681
           NE+ S +D E  + K C CQ G
Sbjct: 215 NEMVSEEDMEEDNEKYCFCQQG 236


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 520 YFKPCHGFRGISHLKYNRS 576
           Y KP H  +G++HLKY RS
Sbjct: 81  YGKPVH--QGVNHLKYQRS 97


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 520 YFKPCHGFRGISHLKYNRS 576
           Y KP H  +G++HLKY RS
Sbjct: 81  YGKPVH--QGVNHLKYQRS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,298
Number of Sequences: 5004
Number of extensions: 62084
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)