Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30814
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   2.9  
Z83102-3|CAB05466.1|  399|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m...    28   8.9  
AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk (m...    28   8.9  

>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 737  FSNKDTEIGDSKTCLCQNGIGSTLDPFHHHIEFP 636
            F  +D+E  + K C  Q    S+L PFH ++  P
Sbjct: 3135 FGQEDSEHEELKHCSSQYSFDSSLPPFHRYVACP 3168


>Z83102-3|CAB05466.1|  399|Caenorhabditis elegans Hypothetical
           protein C54C8.4 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 415 MCIIHKNKHYAVTFLNEDLKSKHK 344
           MC I KN  YA+T LNE  + + K
Sbjct: 173 MCYIVKNTEYAITLLNEFAEYERK 196


>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform a
           protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60  WWNHSDPWSLGYRIHGIQILQEPH*KKLPYTINF-ISNK 173
           W   SD WS G  +  +   +EP+   +P TI F I+NK
Sbjct: 373 WSEASDVWSYGVVLWELLTREEPYQGHIPATIAFQIANK 411


>AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform b
           protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60  WWNHSDPWSLGYRIHGIQILQEPH*KKLPYTINF-ISNK 173
           W   SD WS G  +  +   +EP+   +P TI F I+NK
Sbjct: 373 WSEASDVWSYGVVLWELLTREEPYQGHIPATIAFQIANK 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,665
Number of Sequences: 27780
Number of extensions: 340315
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)