Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30814
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    29   4.7  
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,...    28   6.2  

>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 184 NWCTLFEMKFIVYGSFFQCGSCSI 113
           +WC + E K   Y  F+ C SC I
Sbjct: 557 HWCEICESKLSTYYWFYTCDSCKI 580


>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 866

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 108 IQILQEPH*KKLPYTINFISNKVHQFIVR-IYVLVFYFLSALPRFI 242
           ++++ E H +++ + +N +S K H +  R +Y + F F+S +P FI
Sbjct: 527 VKLINEVH-RRISHEVNALSRK-HLWARRFLYPIYFEFISRIPHFI 570


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,264
Number of Sequences: 28952
Number of extensions: 293291
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)