Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30813X
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   1.5  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   1.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   1.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   2.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   2.6  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        24   6.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    24   6.1  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    24   6.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    24   6.1  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    24   6.1  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 21  RHNYVYLASILYISPF*LYCKTNFSFHI-SHRLPFELQK 134
           +H Y+YLA  L+     L C   F F++ ++R  F L K
Sbjct: 63  KHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENFSLFK 101


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 310 HLFNTQWKTSSVIILKIKTQLWLNINNER 224
           H +   W+T   +IL+   Q ++++ NER
Sbjct: 422 HRYPYDWRTHKPLILRATPQWFISLENER 450


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/52 (17%), Positives = 27/52 (51%)
 Frame = -2

Query: 249  FGLI*TMNVFLNTINFAHKRPTVVTVVAKLILVSSPPLAFAIRTVDDD*CEN 94
            F  +    + +   NF+ + P+ + + + + +++  P    ++T+ D+ C+N
Sbjct: 3336 FNTVLRSKIEIQNRNFSFQIPSSIPLSSHMRIIADKPSYVTMQTISDEYCKN 3387


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 58   LALSSFIVKLILVFTS 105
            LALSS ++ LILVFTS
Sbjct: 1052 LALSSTLLNLILVFTS 1067


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 22  GTIMFI*HLFYTLALSSFIVKLIL 93
           GT MF  H F   A SSF+ KL+L
Sbjct: 626 GTSMFHSHKFILCARSSFLRKLLL 649


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 153 VSSPPLAFAIRTVD 112
           V+SPPLAFA R +D
Sbjct: 43  VASPPLAFARRKLD 56


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 22  GTIMFI*HLFYTLALSSFIVKLILVFTSVIVYRSNCKSEW 141
           GTI+    +FY   L++FI  LI     V++Y +     W
Sbjct: 486 GTILSFGVMFYVDRLNAFISFLIAGILVVVIYFTCPPKNW 525


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 296 AMENIECDHPEDQNSTLA*Y 237
           AM NI C  P D N T A Y
Sbjct: 495 AMPNINCWRPADGNETSAAY 514


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 98  SHQSSSTVRIAKASGGDETKISLATTVTTVGRLCAKFIVFK 220
           SH+SSS++ +  +   D++K  +A     V R+C  +  FK
Sbjct: 415 SHESSSSIHLPGSLQTDKSKFDIA----EVERMCKLYSNFK 451


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 201 AHKRPTVVTVVAKLILVSSPPLAFAIRTVDDD*CEN*N*FYN 76
           A K+P ++ + AK  L      +  ++ VD+   EN   FYN
Sbjct: 204 AEKKPEILDLFAKQALTPEKSASDMLKVVDNLKPENNGLFYN 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,594
Number of Sequences: 5004
Number of extensions: 18924
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)