Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30813X
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    29   0.58 
10_02_0062 - 4814139-4814176,4814571-4815627                           27   2.3  
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    27   4.1  
10_01_0071 - 905696-909028                                             26   5.4  
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886...    26   7.2  

>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 21  RHNYVYLASILYISPF*LYCKTNFSFHISHRLPFELQKR 137
           RH  + LA  LY + F LYCK      +  R+P  + KR
Sbjct: 256 RHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKR 294


>10_02_0062 - 4814139-4814176,4814571-4815627
          Length = 364

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 310 HLFNTQWKTSSVIILKIKTQLWLNINNERIFEY 212
           H  N++W+T       +  + W N + E +FEY
Sbjct: 238 HRNNSKWRTYPCSYAMLVEKSWYNFSTEDLFEY 270


>06_03_0924 -
           25976629-25976979,25977471-25978424,25978512-25978565,
           25979135-25979254,25979357-25979532,25979624-25980107,
           25980541-25980744,25981671-25981877,25982179-25982271,
           25982433-25982621,25983364-25983423,25983591-25983927,
           25984195-25984432,25984614-25984816,25985549-25986554,
           25987125-25987290,25987715-25987824,25987944-25988195,
           25988360-25988402,25988488-25988550,25989512-25989624,
           25990787-25990838
          Length = 1824

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 242 KPKLSFDLQDDH 277
           KPKL FDL+DDH
Sbjct: 494 KPKLIFDLKDDH 505


>10_01_0071 - 905696-909028
          Length = 1110

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 207  NFAHKRPTVVTVVAKLILVSSPPLAFAI 124
            +F  KRP ++ VVA L  + +PP A AI
Sbjct: 1083 DFPSKRPNMLQVVAMLRELDAPPPATAI 1110


>01_06_1525 +
           37988037-37988237,37988315-37988410,37988508-37988620,
           37988739-37988805,37988891-37988983,37989095-37989238,
           37989681-37989769,37989912-37990017,37990224-37990311,
           37990395-37990513,37990786-37990950,37991222-37991406,
           37991568-37991668,37991960-37992069,37992287-37992394,
           37992596-37992706,37992791-37993002,37993087-37993423,
           37993593-37993619,37993767-37993877
          Length = 860

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 101 HQSSSTVRIAKASGGDETKISLATTVTTVGRLCA 202
           H S +T+ I +  GGD TKI+ +    TV  +C+
Sbjct: 712 HPSGNTLVIFEEKGGDPTKITFSR--RTVASVCS 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,044,209
Number of Sequences: 37544
Number of extensions: 107433
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)