Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30813X
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)                 29   0.58 
SB_54434| Best HMM Match : Glyco_hydro_65C (HMM E-Value=9.5)           28   1.3  
SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_31175| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_36745| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)           25   9.5  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    25   9.5  
SB_45127| Best HMM Match : Myosin_tail_2 (HMM E-Value=3.8e-05)         25   9.5  
SB_2034| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)
          Length = 488

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 95  FSHQSSSTVRIAKASGGDETKISLATTVTTVGRLCA-KFIVFKNTFIVYIKPKLSFDLQD 271
           F+H  S   +     G   + + + ++V     LC   F+V+ N     + P  S  L  
Sbjct: 217 FAHYLSDRTQCTVVQGATSSPLPVLSSVPQGSLLCPLHFLVYINDLPALLDPGTSLSLFA 276

Query: 272 DHTRCF 289
           D T+C+
Sbjct: 277 DDTKCY 282


>SB_54434| Best HMM Match : Glyco_hydro_65C (HMM E-Value=9.5)
          Length = 384

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 225 VFLNTINFAHKRPTVVTVVAKLILVSSPPLAFAIRTVDD 109
           ++L  +N ++KR  ++TV   L+LVSS          DD
Sbjct: 337 LYLTRVNLSNKRSNIITVSYVLLLVSSQSFYRLFMCADD 375


>SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 98  SHQSSSTVRIAKASGGDE-TKISLATTV-TTVGRLCAKFIVFKNTFIVYI 241
           +H+SS     A +S   +   IS+ T + TT+G + A F+V +  F VY+
Sbjct: 186 THKSSIERTSAISSPPTQGASISVTTKIATTIGLIIATFLVCRTPFFVYL 235


>SB_31175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 310 HLFNTQWKTSSVII--LKIKTQLWLNINNERIFEYNKLRAQAPYRCYRGR 167
           H  +T+ +   + I  L+ +   WL I+    ++Y+++   + Y C+RGR
Sbjct: 32  HALHTETRLGFINIPWLEYRDDGWL-IHEHLAYQYSQILLHSRYCCFRGR 80


>SB_36745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 310 HLFNTQWKTSSVII--LKIKTQLWLNINNERIFEYNKLRAQAPYRCYRGR 167
           H  +T+ +   + I  L+ +   WL I+    ++Y+++   + Y C+RGR
Sbjct: 32  HALHTETRLGFINIPWLEYRDDGWL-IHEHLAYQYSQILLHSRYCCFRGR 80


>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
          Length = 1019

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 206 TSRTSALPLLPWSLNLF*FRHRHSLLQFER-*TMTDVKTK 90
           T+    +  LPW+++   FR +HSLL   R  +  DVK K
Sbjct: 266 TNGDEIVSTLPWAISHGKFRDKHSLLHTLRDNSSNDVKEK 305


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 95   FSHQSSSTVRIAKASGGDETKISLATTVTTV 187
            + HQ + ++ ++   GG E K S AT   T+
Sbjct: 2989 YEHQENYSLNVSATDGGKEPKTSYATVRITL 3019


>SB_45127| Best HMM Match : Myosin_tail_2 (HMM E-Value=3.8e-05)
          Length = 122

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 21  RHNYVYLASILYISPF*LYCKTNFSFHISHRLPFELQKRVAVTKLK 158
           RH Y   A +L ++   +Y   + ++   HR+ +E    ++V+ LK
Sbjct: 10  RHGYKPRARVLILTDVAIYILEDKTYKQKHRISYEGVHGISVSSLK 55


>SB_2034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 255 VLIFRMITLDVFHCVLNKC 311
           VL+  +IT+D+F C  N C
Sbjct: 554 VLLIVLITIDLFCCFFNSC 572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,496,291
Number of Sequences: 59808
Number of extensions: 138326
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)