Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30813X
         (313 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   2.0  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    27   3.5  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    27   3.5  
At3g13050.1 68416.m01626 transporter-related low similarity to a...    26   4.6  
At1g14160.1 68414.m01674 integral membrane family protein locati...    26   4.6  
At5g16890.1 68418.m01980 exostosin family protein contains Pfam ...    25   8.1  
At3g08750.1 68416.m01017 F-box family protein contains F-box dom...    25   8.1  
At2g48060.1 68415.m06015 hypothetical protein                          25   8.1  

>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 280 SVIILKIKTQLWLNINNERIFEY 212
           S I+L   T LWL +  +R+FE+
Sbjct: 493 SGIVLSAATSLWLPVTQQRLFEF 515


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 268 LKIKTQLWLNINNERIFEYNKLRAQAPYRCY 176
           L  K ++W NI+N ++ E+N L+      CY
Sbjct: 580 LDAKIRIW-NISNRQVVEWNDLKEMVTAVCY 609


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 301 NTQWKTSSVIILKIKTQLWLNINNERIFEYNKLRAQAPYR 182
           N QW+ +S ++  +  +LW N  NE +F   +  AQ   R
Sbjct: 350 NPQWEKASQLVPWLLWRLWKN-RNELVFRGREFNAQEVLR 388


>At3g13050.1 68416.m01626 transporter-related low similarity to
           apical organic cation transporter [Sus scrofa]
           GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
           {Rattus norvegicus}; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 500

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 209 IVFKNTFIVYIKPKLSFDLQDDHTRCFP 292
           + F N F  Y    L+ +L + H RC+P
Sbjct: 300 VFFGNAFAYYGVVLLTTELNNSHNRCYP 327


>At1g14160.1 68414.m01674 integral membrane family protein location
           of EST 168K9XP 3', gb|AA651045; contains TIGRFAM
           TIGR01569 : plant integral membrane protein TIGR01569;
           contains Pfam PF04535 : Domain of unknown function
           (DUF588)
          Length = 209

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 310 HLFNTQWKTSSVIILKIKT 254
           H+F+TQ KTS +I+L + T
Sbjct: 120 HIFSTQAKTSRIILLVVDT 138


>At5g16890.1 68418.m01980 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 511

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 FIVFKNTFIVYIKPKLSFDLQDDHTR 283
           F+     F++Y  PKLS  ++DD  R
Sbjct: 59  FVTSLEHFLIYKAPKLSLPVRDDTVR 84


>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 280 SVIILKIKTQLWLNINNERIFEYNKLRAQAPYRCYR 173
           S+I  K   + W N+  E+ F YN L   +P R  R
Sbjct: 28  SLIRFKSTCKKWYNLITEKRFMYNHLDHYSPERFIR 63


>At2g48060.1 68415.m06015 hypothetical protein
          Length = 621

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 146 DETKISLATTVTTVGRLCAKFIVFKNTFIVYIKP 247
           +ETK+ +  T+    R C++ I+    F++ +KP
Sbjct: 472 EETKVLVVATIAWGLRKCSRAIMLALIFLIAMKP 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,852,175
Number of Sequences: 28952
Number of extensions: 94634
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)