Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30811
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 138 8e-34
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 118 5e-28
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 111 8e-26
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 104 9e-24
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 98 1e-21
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 87 2e-18
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 75 7e-15
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 45 8e-06
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 2.3
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.0
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.0
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 4.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 5.2
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.1
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 138 bits (333), Expect = 8e-34
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGGKSIYG KF DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+HVVFG
Sbjct: 70 GTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGE 129
Query: 181 VVEGMEVVKQIETFGSQSGKTSKRML 258
V EGM+VVK++E+ GS SG T R++
Sbjct: 130 VTEGMDVVKKVESLGSNSGATRARIV 155
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 118 bits (285), Expect = 5e-28
Identities = 52/71 (73%), Positives = 60/71 (84%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGGKSIYG++F DENF L H PG+LSMANAG D+NGSQFFITTVKT WLDG HVVFG
Sbjct: 95 GTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGE 154
Query: 181 VVEGMEVVKQI 213
V+ G ++VK+I
Sbjct: 155 VLSGYDIVKKI 165
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 111 bits (267), Expect = 8e-26
Identities = 51/78 (65%), Positives = 61/78 (78%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGG+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T LDG+HVVFG
Sbjct: 75 GTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGK 134
Query: 181 VVEGMEVVKQIETFGSQS 234
V++G V+ IE +++
Sbjct: 135 VIQGKSTVRTIENLETKN 152
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 104 bits (250), Expect = 9e-24
Identities = 47/74 (63%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 GTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITTV +LDG+HVVFG
Sbjct: 79 GTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFG 138
Query: 178 NVVEGMEVVKQIET 219
V+EG ++VK+IE+
Sbjct: 139 EVIEGYDIVKEIES 152
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
G GG SIYG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG
Sbjct: 61 GRGGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFG 120
Query: 178 NVVEGMEVVKQI 213
VV G+ V K++
Sbjct: 121 RVVSGLSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 87.0 bits (206), Expect = 2e-18
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
GTGG+SI+ FEDE + LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F
Sbjct: 514 GTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFA 573
Query: 178 NVVEGMEVVKQIE 216
G++VV +IE
Sbjct: 574 RAYAGLDVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 75.4 bits (177), Expect = 7e-15
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
G GG+SI+G F+DE LKH G++SMAN G +TNGSQFFI LD +H +FG
Sbjct: 335 GRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFG 394
Query: 178 NVVEGMEVVKQIETFGSQSGKTSK 249
VV G+ V+ +E + S K
Sbjct: 395 RVVGGLNVLDALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 45.2 bits (102), Expect = 8e-06
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
G GG+SIYG F E L+ G++ MA + N SQFFIT T +G+ +FG
Sbjct: 72 GMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFG 131
Query: 178 NVV 186
VV
Sbjct: 132 RVV 134
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 239 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 153
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 111 WFPVLHHHC 137
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 257 NILLEVFPDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAME 81
N+LL +F WLP + L T++ P +++VL+ ++E + LAME
Sbjct: 327 NLLLAIFQQWLPLSTAILLTAIREIPSPINAQANRARKVLSST-PHYEMIDPDITLAME 384
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 206 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 57
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -1
Query: 224 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 45
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 44 SSSNL 30
SSS++
Sbjct: 222 SSSSI 226
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -3
Query: 195 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 34
H N P + P +S EL + IS+G+DA S VLK E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286
Query: 33 LIAVDGLSPS 4
LSPS
Sbjct: 287 KFLHHSLSPS 296
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 255 HSLRGLPRLAAKGLNLLDNFHA--FNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHG 82
+ L G + G NL F A +++ P+ NM P ++ +GT + T SHG
Sbjct: 218 YGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTNTYTSASHG 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,497
Number of Sequences: 5004
Number of extensions: 51704
Number of successful extensions: 144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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