Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30811
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 146 2e-35
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 2e-35
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-27
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 97 8e-21
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 85 3e-17
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 3e-16
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 79 4e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 9e-15
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 32 0.45
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.59
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 31 0.78
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.4
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_27000| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 7.3
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 146 bits (353), Expect = 2e-35
Identities = 64/86 (74%), Positives = 76/86 (88%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TNGSQFF+TT KT WLDG+HVVFGN
Sbjct: 205 GTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGN 264
Query: 181 VVEGMEVVKQIETFGSQSGKTSKRML 258
V+EG +VV+++E GSQSGK SK+++
Sbjct: 265 VIEGFDVVRKMEAVGSQSGKASKKVV 290
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 145 bits (352), Expect = 2e-35
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGGKSIYG KF DENF LKHTGPG+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+
Sbjct: 71 GTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGS 130
Query: 181 VVEGMEVVKQIETFGSQSGKTSKRML 258
V +GM+VVK+IE GS SGKTSK+++
Sbjct: 131 VKDGMDVVKKIEKVGSDSGKTSKKVV 156
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 120 bits (289), Expect = 1e-27
Identities = 55/67 (82%), Positives = 58/67 (86%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT WLDGRHVVFG
Sbjct: 113 GTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 172
Query: 181 VVEGMEV 201
V++GMEV
Sbjct: 173 VLKGMEV 179
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 118 bits (284), Expect = 4e-27
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG
Sbjct: 94 GTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGK 153
Query: 181 VVEGMEVVKQIE 216
V+EGM+VV++IE
Sbjct: 154 VLEGMDVVRRIE 165
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.5 bits (232), Expect = 8e-21
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VFG
Sbjct: 3 GTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFG 62
Query: 178 NVVEGMEVVKQI 213
VV+GM+V +QI
Sbjct: 63 RVVKGMDVAQQI 74
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/72 (50%), Positives = 50/72 (69%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
G GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG
Sbjct: 46 GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105
Query: 181 VVEGMEVVKQIE 216
V+EG+ V+ +E
Sbjct: 106 VIEGLNVLDVLE 117
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +1
Query: 85 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 216
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE 44
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +1
Query: 58 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 216
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 78.6 bits (185), Expect = 4e-15
Identities = 41/73 (56%), Positives = 50/73 (68%)
Frame = +1
Query: 1 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 180
GTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG+
Sbjct: 26 GTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGH 75
Query: 181 VVEGMEVVKQIET 219
V++G E+V+QIE+
Sbjct: 76 VIQGEELVRQIES 88
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 9e-15
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +1
Query: 76 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 213
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 61 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 177
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 61 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 213
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 163 HVVFGNVVEGMEVVKQIET 219
HVVFG+V++G E+V+QIE+
Sbjct: 3 HVVFGHVIQGEELVRQIES 21
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -1
Query: 203 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 66
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 176 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 66
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 206 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 66
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 31.1 bits (67), Expect = 0.78
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -3
Query: 237 PRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARS 67
PR A +GL D F+ K+ MS I+PGG D +EE T S G + E A+S
Sbjct: 443 PRRAGEGLPHSDFKSGFSY--KEYMSGIRPGGPDMEEEEKATPQ-SNGDASDEKAQS 496
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -1
Query: 179 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 66
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 179 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 66
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_27000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 453 FPCIISMFIVAFLLLHFYFTSSL 521
F C +++ IVA ++LHFY+ S +
Sbjct: 50 FVCFLAIIIVAVVVLHFYYNSGV 72
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 224 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 45
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 44 SS 39
+S
Sbjct: 145 TS 146
>SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 477 IVAFL-LLHFYFTSSLAVCLDLNNSHYRRPLFISTTMLQF 593
+VAF ++ F +++ VC L N HYRR + S L F
Sbjct: 284 VVAFCNIMTFANSAANPVCYTLLNDHYRREIIYSLRKLTF 323
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 236 PDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 66
P P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 227 LPKVSICL-TTSMPSTTFPKTTCLPSSQEVLTV-VMKNWEPLVSAPALAMERTPGP 66
+P+ ++ L TT+ P TT P T + S + +V M + S +A E T P
Sbjct: 1626 VPETTLALETTTAPETTLPPETTMASESTLASVTTMAPESTVASVTTMAPESTLAP 1681
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,744
Number of Sequences: 59808
Number of extensions: 362470
Number of successful extensions: 1013
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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