Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30810X
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   2.1  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    26   2.8  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    25   4.8  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   4.8  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   6.4  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    25   6.4  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 276 PNGFQPKTSLGQKLKPQKPV-DIQNTPSQYKLDNDFVGS*EISMLSSNLVMS 428
           P+G+    + G  ++PQKP+ D+   P    +D+  + +  + MLSS   +S
Sbjct: 486 PSGYYSSGAPGAPVQPQKPIEDLNKIPINQGMDSSQIENTNL-MLSSQRPLS 536


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 327 KPVDIQNTPSQYKLDNDF 380
           +PVDI   PS +KLDN F
Sbjct: 289 EPVDITVDPSFFKLDNSF 306


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 366 LDNDFVGS*EISMLSSNLVMSSDKSNF 446
           LD DF G  E S   +NLV+ S+  N+
Sbjct: 84  LDADFAGEIEKSFRDANLVIVSNAKNY 110


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 318  LTSGPMRFWVGSRWVPL*K*QLVLAVRSYVSILSSNCQSCILGL 187
            L    M F + S W+P      +  +RSY  ++      CI+G+
Sbjct: 1108 LKKAGMDFMLFSFWLPALLLLSIFGLRSYAQMIGGYLYRCIIGI 1151


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 305 GPEVKTPKTCGHTEYSVS 358
           GPE++T  T G T+Y +S
Sbjct: 94  GPEIRTGLTVGGTDYPIS 111


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 282 GFQPKTSLGQKLKPQKPVDIQNTPSQYKLDNDFV 383
           G  P   +G+++ P     ++N P+++KL  DF+
Sbjct: 10  GLIPADGIGKEVVPAARRLMENLPAKHKLKFDFI 43


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 394 RSRCYHLTL*CPVTKAISNFSCHMDTIFNVY 486
           R R Y   L C    A++  S H+D+  +VY
Sbjct: 252 RKRQYFYVLGCSSLSALNQMSKHVDSFSDVY 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,518
Number of Sequences: 5004
Number of extensions: 43576
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)