Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30810X
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0298 + 14080353-14080927,14081041-14081554                       28   4.8  
04_03_0293 - 14001443-14001956,14002070-14002644                       28   4.8  
11_01_0329 + 2471015-2471075,2471152-2471432                           27   8.5  
05_04_0454 + 21383068-21384525                                         27   8.5  
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    27   8.5  

>04_03_0298 + 14080353-14080927,14081041-14081554
          Length = 362

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 7   LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 135
           L +V VA VLV L  G        V  L+F +   PDG   AY
Sbjct: 314 LLFVAVAGVLVDLIMGTGGNVAPPVTDLKFHTATMPDGMQLAY 356


>04_03_0293 - 14001443-14001956,14002070-14002644
          Length = 362

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 7   LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 135
           L +V VA VLV L  G        V  L+F +   PDG   AY
Sbjct: 314 LLFVAVAGVLVDLIMGTGGNVAPPVTDLKFHTATMPDGMQLAY 356


>11_01_0329 + 2471015-2471075,2471152-2471432
          Length = 113

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 43  LCSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGT 153
           LC    +Q+P D+   +  SN   D  +  Y  SDGT
Sbjct: 63  LCGDGKKQSPIDIVTKQAISNPNLDSLNRTYTASDGT 99


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 199 AALTVTGQYAYVAPDGKH*LSLSQRDPTASNPKPHWARS*NP 324
           AA TVT   ++ A DG H ++ S R  T S P     ++ +P
Sbjct: 139 AASTVTTPCSHAADDGGHGVTTSPRTTTTSLPDSRGMKTLSP 180


>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
            33230829-33231005,33231159-33231274,33231422-33231520,
            33231598-33232040,33232147-33232184,33232343-33232600,
            33233378-33233525,33233989-33234108,33234884-33234984,
            33235090-33235213,33235386-33235498,33236103-33236214,
            33236298-33236432,33236527-33236593,33236685-33236741,
            33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 258  QLVLAVRSYVSILSSNCQSCILGLWVVEFAFFLS--GCTITSFVRKAVAIGFH 106
            +L  A  SY+  +   C+ C+L L +V   + L+   C+ITS   + +A   H
Sbjct: 992  RLTDACGSYLFTILQKCKECVLCLHIVTALYSLNVEQCSITSRTVQKMADALH 1044


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,814
Number of Sequences: 37544
Number of extensions: 287003
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)