Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30810X
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 31 0.62
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 0.62
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 0.62
Z83239-7|CAB05806.2| 345|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 2.5
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 2.5
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 2.5
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 2.5
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 4.4
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 4.4
AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical ... 28 4.4
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +1
Query: 31 VLVALCSGAPQQNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 186
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4301 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4360
Query: 187 QSENAALTVTGQYAY--VAPDGK 249
+ +G Y Y + PDG+
Sbjct: 4361 NGQILPTDASGNYIYPVIGPDGQ 4383
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 249
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4485 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4528
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY 231
SF E D EEGK P E A +G Y Y
Sbjct: 5048 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVY 5083
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 249
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7872 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7915
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +1
Query: 31 VLVALCSGAPQQNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 186
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4346 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4405
Query: 187 QSENAALTVTGQYAY--VAPDGK 249
+ +G Y Y + PDG+
Sbjct: 4406 NGQILPTDASGNYIYPVIGPDGQ 4428
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 249
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4573
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY 231
SF E D EEGK P E A +G Y Y
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVY 5128
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 249
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +1
Query: 31 VLVALCSGAPQQNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 186
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4346 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4405
Query: 187 QSENAALTVTGQYAY--VAPDGK 249
+ +G Y Y + PDG+
Sbjct: 4406 NGQILPTDASGNYIYPVIGPDGQ 4428
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 249
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4573
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY 231
SF E D EEGK P E A +G Y Y
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVY 5128
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 249
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960
>Z83239-7|CAB05806.2| 345|Caenorhabditis elegans Hypothetical
protein T09F5.5 protein.
Length = 345
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = -3
Query: 486 VHIEDSVHMAREIRNCFCHWTLQG*MITSRSLSCLQNHCLTYI-ETEYSV--CPQVFGVL 316
VHI S + + C+C L + S + L HC T + + ++V P +F
Sbjct: 29 VHINTSFSVPLSMYGCYCVIKLTPKKLGSAKWALLNAHCWTVVLDIVFNVLALPLMFFPS 88
Query: 315 TSGPMRFWVGSRWVPL*K*QLVLAVRSYVSILSS 214
SG M W +++ + L+ A+++ VS+ +S
Sbjct: 89 ISGVMLGW--GQYIGIPSWFLLYAIQAIVSVFAS 120
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 217 GQYAYVAPDGKH*LSLSQRDPTASNP--KPHWARS 315
G Y+ +AP +H L L R PT N +P W RS
Sbjct: 3554 GTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRS 3588
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 217 GQYAYVAPDGKH*LSLSQRDPTASNP--KPHWARS 315
G Y+ +AP +H L L R PT N +P W RS
Sbjct: 3554 GTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRS 3588
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 217 GQYAYVAPDGKH*LSLSQRDPTASNP--KPHWARS 315
G Y+ +AP +H L L R PT N +P W RS
Sbjct: 3554 GTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRS 3588
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 217 GQYAYVAPDGKH*LSLSQRDPTASNP--KPHWARS 315
G Y+ +AP +H L L R PT N +P W RS
Sbjct: 3554 GTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRS 3588
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 243 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 142
V Y+ ++ N +C++ + + F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 243 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 142
V Y+ ++ N +C++ + + F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical
protein Y102A11A.7 protein.
Length = 172
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 16 VTVACVL-VALCSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNP 186
+TV C + + LC+ +N Q ++L+F S+ SFAY ++G G +P
Sbjct: 108 LTVICWMGIWLCNRRKDKN-QKKELLKFGSSSSVSNMSFAYPIANGHYHFGTGPFQSP 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,636
Number of Sequences: 27780
Number of extensions: 255377
Number of successful extensions: 714
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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