Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30810X
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   7.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   7.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 354  TEYSVCPQVFGVLTSGPM 301
            T+YSV  Q F  + SGPM
Sbjct: 1051 TQYSVVVQAFNKVGSGPM 1068


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 312 KLKPQKPVDIQNTPSQYKL 368
           KLKP K V I N  S+ K+
Sbjct: 258 KLKPNKKVRISNEMSKVKV 276


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 491 KKYTLKIVSIWHEKLEIAF 435
           K+YT ++   W++ L++ F
Sbjct: 144 KQYTPEVAEAWNKTLDMMF 162


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 491 KKYTLKIVSIWHEKLEIAF 435
           K+YT ++   W++ L++ F
Sbjct: 144 KQYTPEVAEAWNKTLDMMF 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,819
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)