Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30810X
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    29   1.8  
At2g28890.1 68415.m03511 protein phosphatase 2C family protein /...    28   4.1  
At5g47690.1 68418.m05887 expressed protein                             27   5.4  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    27   5.4  
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi...    27   5.4  
At1g26760.1 68414.m03258 SET domain-containing protein contains ...    27   9.4  

>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 97  DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQY 225
           D+++E D   + Y T      +E  ++DNPQ E       G+Y
Sbjct: 390 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432


>At2g28890.1 68415.m03511 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 654

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = +1

Query: 43  LCSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQ 222
           L  GA +    ++ IL  D   E  G+SF Y   D T R    K+ + +      T++G 
Sbjct: 12  LTGGAGRNKKPELSILEPDPLDEGLGHSFCYVRPDPT-RVSSSKVHSEEETTTFRTISG- 69

Query: 223 YAYVAPDGKH*LSLSQRDP 279
            A V+ +    LS S  DP
Sbjct: 70  -ASVSANTATPLSTSLYDP 87


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 73   QDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENA 201
            +D+Q  + +S+ + +G    ++ SD   +QE  +++    ENA
Sbjct: 1585 EDLQEAKTESSGDAEGKEAEHDDSDTEGKQENNEMEREAEENA 1627


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 49  SGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSR 159
           SG P+  P +  +  F ++ E   YSF    SD  SR
Sbjct: 228 SGVPEMQPFEYMVFNFTTSKEEVTYSFRITKSDVYSR 264


>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
           protein
          Length = 508

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 75  LGILLWST*AKGYQHASDCH 16
           LGIL W+   KG++H+SD +
Sbjct: 105 LGILKWAESCKGHKHSSDAY 124


>At1g26760.1 68414.m03258 SET domain-containing protein contains
           Pfam profiles PF00856: SET domain, PF00515:
           tetratricopeptide repeat (TPR) domain
          Length = 967

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 103 CCQNVESEHLGDFVVEHLSKGLPARKRLS 17
           C  N    H+GD+V+ H S+ +   + +S
Sbjct: 766 CIPNARRLHVGDYVIVHASRDIKTGEEIS 794


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,536,250
Number of Sequences: 28952
Number of extensions: 234325
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)