Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30809X
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    95   6e-21
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    95   6e-21
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.2  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.7  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 101 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDERHP 265
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE  P
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSP 59



 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 32/65 (49%), Positives = 39/65 (60%)
 Frame = +1

Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
           QD A KC+ +GITALHIK+RA            AQ          M+IGRIEDVTP+ +D
Sbjct: 67  QDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTD 126

Query: 466 STRRR 480
           STRR+
Sbjct: 127 STRRK 131


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 101 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDERHP 265
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE  P
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSP 59



 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 32/65 (49%), Positives = 39/65 (60%)
 Frame = +1

Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
           QD A KC+ +GITALHIK+RA            AQ          M+IGRIEDVTP+ +D
Sbjct: 67  QDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTD 126

Query: 466 STRRR 480
           STRR+
Sbjct: 127 STRRK 131


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 111 WGPRVTWTSSLATLFFL 61
           +GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 175 RSCY*FIRP--GNYRPCHWWHEGE 240
           RSC+  +R    N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,023
Number of Sequences: 5004
Number of extensions: 40554
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)