Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30809X
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 107 8e-24
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 104 4e-23
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 103 7e-23
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 5.8
05_03_0656 - 16676406-16676654 28 5.8
09_04_0520 + 18286435-18287279,18287818-18288697 27 7.6
08_02_1092 + 24267737-24268641,24269005-24269884 27 7.6
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224... 27 7.6
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 27 7.6
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 107 bits (256), Expect = 8e-24
Identities = 52/71 (73%), Positives = 57/71 (80%)
Frame = +2
Query: 53 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 232
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 233 KVKADRDERHP 265
KVKADRDE P
Sbjct: 60 KVKADRDESSP 70
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/51 (49%), Positives = 28/51 (54%)
Frame = +1
Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 438
QDVA++C+ LGITALHIKLRA AQ MKIGRI
Sbjct: 78 QDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 439 EDVTPVASDSTRRR 480
EDVTPV +DSTRR+
Sbjct: 178 EDVTPVPTDSTRRK 191
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 104 bits (250), Expect = 4e-23
Identities = 50/71 (70%), Positives = 55/71 (77%)
Frame = +2
Query: 53 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 232
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 233 KVKADRDERHP 265
KVKADRDE P
Sbjct: 61 KVKADRDESSP 71
Score = 57.2 bits (132), Expect = 8e-09
Identities = 36/76 (47%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Frame = +1
Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI--------- 438
QDVA++C+ LGITALHIKLRA AQ MKIGRI
Sbjct: 79 QDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFC 138
Query: 439 --EDVTPVASDSTRRR 480
EDVTPV +DSTRR+
Sbjct: 139 HTEDVTPVPTDSTRRK 154
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 103 bits (248), Expect = 7e-23
Identities = 50/68 (73%), Positives = 55/68 (80%)
Frame = +2
Query: 62 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 241
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 242 ADRDERHP 265
ADRDE P
Sbjct: 86 ADRDESSP 93
Score = 69.7 bits (163), Expect = 1e-12
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = +1
Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
QDVA++C+ LGITALHIKLRA AQ MKIGRIEDVTPV +D
Sbjct: 101 QDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTD 160
Query: 466 STRRR 480
STRR+
Sbjct: 161 STRRK 165
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 107 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 238
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 279 GGTGCSREMRNSWHNGLAHKAPCYWWKQYKD 371
GG G R + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 147 CATPNTVSPTKCWGPR 100
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 147 CATPNTVSPTKCWGPR 100
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>06_01_0311 -
2243117-2243185,2243321-2243400,2243554-2243620,
2245176-2245226,2245317-2245402,2245501-2245612
Length = 154
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 433 RIEDVTPVASDSTRRRVAEEDAGCNRF 513
R+EDV P+A+ R +A E G RF
Sbjct: 45 RVEDVMPIATGLEREEIAAELQGKKRF 71
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 426 DWPH*RCHPRSIRLDP 473
D PH RC+ R +RLDP
Sbjct: 10 DLPHVRCYTRHLRLDP 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,431
Number of Sequences: 37544
Number of extensions: 305271
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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