Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30809X
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   111   3e-25
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  111 bits (267), Expect = 3e-25
 Identities = 53/72 (73%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
 Frame = +2

Query: 53  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 229
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 230 MKVKADRDERHP 265
           MKVKADRDE  P
Sbjct: 61  MKVKADRDESSP 72



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/65 (52%), Positives = 39/65 (60%)
 Frame = +1

Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
           QDVA++C+ LGI ALHIKLRA            AQ          MKIGRIEDVTP+ SD
Sbjct: 80  QDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSD 139

Query: 466 STRRR 480
            TRR+
Sbjct: 140 CTRRK 144


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 444 IFNAANLHT*PSQSPKCRLSSRTRGLCIVSTSSTELYVQGRYAKSFAFLCYIL 286
           + ++ NL T  +     R+ + T   C++S     L    +Y  SF F CY L
Sbjct: 274 LMSSKNLLTWLNSMITLRIPNGTCKDCVLSNLFASLGKDNQYTSSFLFFCYFL 326



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 393 RLSSRTRGLCIVSTSSTELYVQGRYAKSFAFLCYIL 286
           RL + T   C++S     L    +Y  SF F CY L
Sbjct: 63  RLPNGTCKDCVLSNLFASLGKDNQYTSSFLFFCYFL 98


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 107 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 235
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,577
Number of Sequences: 27780
Number of extensions: 251840
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)