Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30809X
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   6.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   6.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 429 NLHT*PSQSPKCRLSSR 379
           N+HT PS+ P C +  R
Sbjct: 24  NVHTRPSKEPICNICKR 40


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 249 RSAFTFMPPVTRAIVSRPDKSVT 181
           R  FT+   + ++I+  PDK +T
Sbjct: 504 RPPFTYASLIRQSIIESPDKQLT 526


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 128 TVFGVAHIFASFNDTFVHVTDLSGRETI 211
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 128 TVFGVAHIFASFNDTFVHVTDLSGRETI 211
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 326 AVMPRVSHFSATSCAANIAA*G 261
           A+   +SHF   SC  N+A  G
Sbjct: 569 AIYGNISHFINHSCDPNLAVYG 590


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 317 PRVSHFSATSCAANIAA*GDAHHGQPS 237
           PR++   ++S +++  A G A  GQPS
Sbjct: 515 PRIASAPSSSTSSSPPAKGAAAAGQPS 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,529
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)