Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30809X
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           105   3e-23
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   104   3e-23
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   103   6e-23

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  105 bits (251), Expect = 3e-23
 Identities = 51/71 (71%), Positives = 56/71 (78%)
 Frame = +2

Query: 53  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 232
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 233 KVKADRDERHP 265
           KVKADRDE  P
Sbjct: 60  KVKADRDESSP 70



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 33/65 (50%), Positives = 41/65 (63%)
 Frame = +1

Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
           QDVA++C+ LGITA+H+KLRA            AQ          MKIGRIEDVTP+ +D
Sbjct: 78  QDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137

Query: 466 STRRR 480
           STRR+
Sbjct: 138 STRRK 142


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  104 bits (250), Expect = 3e-23
 Identities = 51/71 (71%), Positives = 55/71 (77%)
 Frame = +2

Query: 53  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 232
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 233 KVKADRDERHP 265
           KVKADRDE  P
Sbjct: 60  KVKADRDESSP 70



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 33/65 (50%), Positives = 41/65 (63%)
 Frame = +1

Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
           QDVA++C+ LGITA+H+KLRA            AQ          MKIGRIEDVTP+ +D
Sbjct: 78  QDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137

Query: 466 STRRR 480
           STRR+
Sbjct: 138 STRRK 142


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  103 bits (248), Expect = 6e-23
 Identities = 50/71 (70%), Positives = 55/71 (77%)
 Frame = +2

Query: 53  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 232
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 233 KVKADRDERHP 265
           KVKADRDE  P
Sbjct: 60  KVKADRDESSP 70



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 33/65 (50%), Positives = 41/65 (63%)
 Frame = +1

Query: 286 QDVAEKCETLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVASD 465
           QDVA++C+ LGITA+H+KLRA            AQ          MKIGRIEDVTP+ +D
Sbjct: 78  QDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137

Query: 466 STRRR 480
           STRR+
Sbjct: 138 STRRK 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,438
Number of Sequences: 28952
Number of extensions: 232107
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)