Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30805
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0541 + 18437075-18440062                                         32   0.44 
11_06_0579 - 25181389-25182289,25182556-25182584                       28   7.1  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   7.1  

>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 460 DRNREKVINPEDSEHNAPAKEKWTLFR-APYVININNIDSQ 579
           ++ R ++ + E+ EH+A  + K  LFR  PY++ I+NID++
Sbjct: 521 EKERGRIRSFEEQEHDAFQRVKRELFRDVPYLLIIDNIDNE 561


>11_06_0579 - 25181389-25182289,25182556-25182584
          Length = 309

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 550 RMVLEIKSTFLWRGRCALNLLDLSLFHG-FGLRWVSENVVNSATDGF 413
           R++L+ K   +W    + N LDL+ FHG +  RWV     + A   F
Sbjct: 71  RLILD-KMLKIWATSTSANKLDLTRFHGEWAQRWVKRYYHHEAPPPF 116


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 339 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 455
           +S  Q ++++ +H  S  Q+  +C +PS+A +  +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,755,822
Number of Sequences: 37544
Number of extensions: 276791
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)