Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30805
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    31   0.91 
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 392 PVAPPMPEAIRRAIDYILAHPPKTETVKK**IQKIQSTTPPPKKS 526
           P+ PP+PE I   +  +LA  P   +V K   +K  +   PP+ S
Sbjct: 57  PIPPPLPEPIPELVQILLAAEPNKPSVPKRSNRKKLTYKQPPRNS 101


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +2

Query: 257 SLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAID 436
           +LKKVD+I+   +Q   E S+P+  P   T+    +  +P   + P +PP P        
Sbjct: 124 NLKKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRP-SPPAP-------- 173

Query: 437 YILAHPPKTETVKK**IQKI--QSTTPPPKKSGLYFEHHTLSISITS 571
                PP+ + +++  ++ +   ST+  P+ S L  E  T ++S T+
Sbjct: 174 -----PPRVDAIEEAVLRAVLEVSTSIAPETSSLEAEAETTTVSETT 215


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 497 QSTTPPPKKSGLYFEHHTLSISITSIVK 580
           Q T PPP  S  +  H T  +S+ + +K
Sbjct: 15  QRTIPPPSSSSSFLSHSTSMVSVAASLK 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,564
Number of Sequences: 27780
Number of extensions: 234904
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)