Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30803X
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   127   1e-30
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   126   2e-30
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    58   1e-09
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    40   4e-04
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    38   0.001
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    37   0.002
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    37   0.003
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   2.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   6.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.6  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.6  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  127 bits (306), Expect = 1e-30
 Identities = 55/77 (71%), Positives = 64/77 (83%)
 Frame = +1

Query: 25  TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 204
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI  +GVCHTDAYTLSGKDPEG+
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65

Query: 205 FPVVLGHEGGGIVESVG 255
           FPV+LGHEG GIVESVG
Sbjct: 66  FPVILGHEGAGIVESVG 82



 Score =  119 bits (287), Expect = 3e-28
 Identities = 50/84 (59%), Positives = 63/84 (75%)
 Frame = +3

Query: 261 VTSVKPGDHVVPLYVPQCNTCKFCLGPGTNLCHKVRSTQGQGVMPDGTRRFRCKGEELYH 440
           VT+V+ GD V+ LY P+C TCKFC    TNLC ++R+TQG+G+MPDGT RF C G  L H
Sbjct: 85  VTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLH 144

Query: 441 FMGCSTFSQYTVVLEISLCKVAEL 512
           FMGCSTFS+YTVV +IS+  +  L
Sbjct: 145 FMGCSTFSEYTVVADISVVAIERL 168



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +2

Query: 506 RAAPLDKVCVLGCGVATGYGAALNTGKLNQ-DQIAL 610
           R APLD VC+LGCG+ TGYGAA  T  + + D +A+
Sbjct: 167 RLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAV 202


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  126 bits (305), Expect = 2e-30
 Identities = 59/88 (67%), Positives = 67/88 (76%)
 Frame = +1

Query: 19  MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 198
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+  + VCHTDAYTLSG DPE
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60

Query: 199 GVFPVVLGHEGGGIVESVGRESLQSSPG 282
           G FP+VLGHEG GIVES+G   +   PG
Sbjct: 61  GAFPIVLGHEGAGIVESIGEGVINVRPG 88



 Score =  122 bits (295), Expect = 3e-29
 Identities = 50/83 (60%), Positives = 64/83 (77%)
 Frame = +3

Query: 258 GVTSVKPGDHVVPLYVPQCNTCKFCLGPGTNLCHKVRSTQGQGVMPDGTRRFRCKGEELY 437
           GV +V+PGDHV+ LY P+C  CKFC    TNLC K+R TQG+G+MPDGT RF C+ + L 
Sbjct: 81  GVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLL 140

Query: 438 HFMGCSTFSQYTVVLEISLCKVA 506
           H+MGCS+FSQYTVV +ISL  ++
Sbjct: 141 HYMGCSSFSQYTVVADISLVAIS 163



 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 509 AAPLDKVCVLGCGVATGYGAALNTGKL 589
           +APL  +C+LGCGV TG+GA  ++ K+
Sbjct: 165 SAPLRSICLLGCGVTTGFGAVTHSAKV 191


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
 Frame = +1

Query: 43  KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 213
           K LAAV    G P ++  EE+ V  P   EV V I  TGVCHTD + L G  P     P+
Sbjct: 6   KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65

Query: 214 VLGHEGGGIVESVG 255
           + GHEG G+V  VG
Sbjct: 66  IGGHEGAGVVVKVG 79


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 124 EVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLGHEGGGIVESVGRESLQSSPG 282
           +V+V I ATG+C +D  Y   G   + +   P++LGHE  G+V  VG+      PG
Sbjct: 31  QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPG 86


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 82  LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLGHEGGGIVES 249
           + I+ + +  PK GE+ VKI A  +  +D    +G  P  V+P ++G +  G V S
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIVGRDYAGTVIS 78


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +1

Query: 49  LAAVAWEAGKPLSIEEIEVDPPKAG---EVRVKITATGVCH-TDAYTLSGKDPEGVFPVV 216
           + A  W+   PL+++  EV  P      +V VK TA  +C  +D++  SG+ P      +
Sbjct: 37  MKACVWDG--PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94

Query: 217 LGHEGGGIVESVGRE 261
           LGHE  GIV   G E
Sbjct: 95  LGHESCGIVAEKGDE 109


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +1

Query: 82  LSIEEIEVDPPKA--GEVRVKITATGVCHTDAYTLSGKDPEGV-FPVVLGHEGGGIVESV 252
           L  EE EV P K   GEV VK+ A  + + D     G  P  +  PVV G +G GI+E V
Sbjct: 17  LKPEEYEV-PQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKV 75

Query: 253 GRE 261
           G +
Sbjct: 76  GED 78


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 235 GIVESVGRESLQSSPGTT*YLCTSHSATH 321
           GIV  +G E   + PGTT     SH++TH
Sbjct: 118 GIVHVIGPEQGFTLPGTTLVCGDSHTSTH 146


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 153
           K ++ +AWE  KPL + E+I  D   +GE+ V  T +G
Sbjct: 63  KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 268  EVTPSRHSPRFRRLHVPVLQETLPQDLFRRVYTRQYG 158
            E +PS H+  +    + VLQ TL +D  + +YT   G
Sbjct: 1386 ETSPSEHTQSYNLNLLDVLQHTL-RDSLKDIYTLNTG 1421


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 337 PKQNLHVLHCGTYRGTTWSPGLTEVTPSRHSPRFRRLHVP 218
           PK   H    G Y GT++   L +V P    P+ +  ++P
Sbjct: 150 PKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIP 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,136
Number of Sequences: 5004
Number of extensions: 56935
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)