Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30803X
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 5e-30
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 35 0.060
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 31 0.56
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 3.0
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 3.9
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 9.1
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 27 9.1
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 128 bits (308), Expect = 5e-30
Identities = 60/80 (75%), Positives = 64/80 (80%)
Frame = +1
Query: 40 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 219
I C AAVAWE KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L
Sbjct: 2 ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61
Query: 220 GHEGGGIVESVGRESLQSSP 279
GHEGGGIVESVG + P
Sbjct: 62 GHEGGGIVESVGEGVTKVKP 81
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +1
Query: 124 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLGHEGGGIVESVGRESLQSSPG 282
EV VK+ +G+C D L G+ P VVLGHE G+V VG + S G
Sbjct: 75 EVIVKVAYSGICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIG 126
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 261 VTSVKPGDHVVPLYVPQCNTCKFCLGPGTNLCHKVRSTQGQGVMPDG 401
V +V GD VV CNTCK C + C K + GV +G
Sbjct: 120 VKNVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 82 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVF-PVVLGHEGGGIVESVGR 258
+ +E+ P G+V VK+ A GV D G P P V G E G+VE +G
Sbjct: 53 IKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVVEELGE 112
Query: 259 E 261
E
Sbjct: 113 E 113
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 124 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLGHEGGGIVESVGRESLQSSPG 282
+V VKI + V TD + L G+ + ++LGH+ GIV+ +G + S G
Sbjct: 27 DVVVKIAYSAVSGTDLHVLEGRI-DCAKSIILGHQFVGIVKEIGADVQHVSVG 78
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 261 VTSVKPGDHVVPLYVPQCNTCKFCLGPGTNLCHKVRSTQGQGVMPDG 401
V V GD VV + C C FCL +LC G+ +G
Sbjct: 72 VQHVSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 103 VDPPKAGEVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLGHEGGGIVESVG 255
+D + +V++ + G+C +D Y G + V P+VLGHE G++ +VG
Sbjct: 14 IDDLRLVQVQISMHTVGICGSDVHYWKHGCIGDFVLTAPMVLGHESSGVICAVG 67
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 258 GVTSVKPGDHVVPLYVPQCNTCKFCLGPGTNLCHKV 365
GV+ +K GD V C TC +C NLC K+
Sbjct: 69 GVSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 61 AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 180
AW G L ++ V P A + +IT TG T AYTL
Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400
>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 26 QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 178
QS L+ P +RG Q + R KW + P KC ++ + E A++ R+H
Sbjct: 3 QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 271 TEVTPSRHSPRFRRLHVPVLQETLPQDL-FRRVYTRQYGRLRW 146
T+ T RH+ RRL+ P E L Q+L F + Y ++ W
Sbjct: 1314 TDKTTKRHNIYIRRLYPPSKPENLKQELIFDKDLENSYQKVHW 1356
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 23 QQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 187
Q S K ++ PQ + KQASR LK KP + SRP ++++ T+ P+
Sbjct: 52 QASRKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107
>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 149 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 3
V+V S + G +S SS +P+S + T+PT DM A N
Sbjct: 3 VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 312 CNTCKFCLG-PGTNLCHKVRSTQGQG 386
CN FC PGT +C +R QG G
Sbjct: 428 CNVNAFCTNTPGTFVCRCIRGYQGDG 453
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 53 PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKI 193
P+ R + SR P R + + + RSR P+S + +R SP +I
Sbjct: 295 PRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRI 341
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = -3
Query: 331 QNLHVLHCGTY--RGTTWSPGLTEVTPSRHSPRFRRL--HVPVLQETLPQDLFR--RVYT 170
+NLH LH G+Y TT +V S ++ VPV + + + LFR RV+T
Sbjct: 681 RNLHKLHVGSYGVSDTTLEEVFLKVAEEAQSEEADKVAAEVPVRRSSFRRHLFRRSRVHT 740
Query: 169 R 167
R
Sbjct: 741 R 741
>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 179 SVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 30
S AS ++PV +++R + G S ++ SG P A + I +P
Sbjct: 321 SASASCSKSPVRPMVSRRIASAGSSQGVTPRQSGTPTQGAQPKRRSIAMP 370
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,435,558
Number of Sequences: 59808
Number of extensions: 500886
Number of successful extensions: 1231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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