Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30803X
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 116  KPVKCALRSRPPESAILTRIHSPEKIL 196
            + + C LR+  P   +L  +H+  ++L
Sbjct: 1102 RDLPCVLRASTPAPVVLEAVHASRRVL 1128



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 286 WSPGLTEVTPSRHSPRFRRL 227
           W PG+   T +R  PR   L
Sbjct: 690 WLPGINNQTSTREYPRIMDL 709


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 209  GNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTS 99
            G   S +F +  +A+   +P   +L R SPAF G++S
Sbjct: 900  GEPTSAAFAQG-FATAASSPG--LLERASPAFSGTSS 933


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 546 PHPSTQTLSNGAALQLYREK 487
           P+P T T +NG   +L +++
Sbjct: 432 PNPCTHTTTNGCTAELRKKE 451


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 546 PHPSTQTLSNGAALQLYREK 487
           P+P T T +NG   +L +++
Sbjct: 418 PNPCTHTTTNGCTAELRKKE 437


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 546 PHPSTQTLSNGAALQLYREK 487
           P+P T T +NG   +L +++
Sbjct: 452 PNPCTHTTTNGCTAELRKKE 471


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 546 PHPSTQTLSNGAALQLYREK 487
           P+P T T +NG   +L +++
Sbjct: 401 PNPCTHTTTNGCTAELRKKE 420


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 459 FSQYTVVLEISLCKV 503
           + QY  VL +SLCK+
Sbjct: 102 WQQYPWVLGVSLCKI 116


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 607 RNLILVQLSSIQGGSITCSYTA 542
           +NL L Q+   +G  ++CS++A
Sbjct: 104 KNLELTQIRRDRGLHVSCSFSA 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,897
Number of Sequences: 438
Number of extensions: 3912
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)