Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30802
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    28   1.8  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   2.4  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.5  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    25   9.5  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   9.5  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 219 VSRLSSNCNSFTTASFLPVLMCS 287
           +S+ SS  NSFTT SFL V +C+
Sbjct: 143 ISKGSSYINSFTTWSFLLVFVCA 165


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 409 FREIFPLDSGCSSVISENTVSCPKPASDR 323
           F EI   +S   SV +E T+S P+P+S R
Sbjct: 291 FDEILHANSSVHSVATEATISNPRPSSGR 319


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 70  FLRR*ASQLLN*CSYLPSAV 11
           FLRR A QLL+ C +LP +V
Sbjct: 692 FLRRAAVQLLDSCKHLPDSV 711


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = -3

Query: 771 CFRGYGWHNASIHHSKTCHTVNS*PRIYHPYMFIAHGASPTVWYCVLAK 625
           CF  + W+     H+  C  V   P + +    I     P   YC   K
Sbjct: 153 CFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKYCK 201


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 182 SGTGTLSMFNKGSMLLIAEDMLSIPVSKTGTNMWS 78
           S T TL+++  G+  L   + ++  +  TGT +W+
Sbjct: 45  SSTVTLTLYRGGNSALTPIETIASDIDNTGTYLWN 79


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +3

Query: 183 HFGLCRFEQIPVVSRLSSNCNSFTTASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFS 362
           + G C  +++  +   S+N  +FT++S L +L      + +++  + + E G G+ T   
Sbjct: 427 NIGRCSLKKLSTIRSCSTNSYAFTSSS-LGLLEQLAAGVQTNEPLLLVGETGTGKTTTIQ 485

Query: 363 LI 368
           L+
Sbjct: 486 LL 487


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 94  PVLLTGMESISSAISNIDPLLNMDKV 171
           P +  G+ES+  A+ + DP+  M K+
Sbjct: 224 PFMCLGLESVQKAVGSSDPITVMKKL 249


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 255 TASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKISLKSSNPED-P 431
           T  FLP    +  L++ DD  + LS   + +   FS     H +   +I+ + S  E  P
Sbjct: 46  TTRFLPFCDLNPALLVKDDKLVTLSYPQISKYFTFS--PFEHTDK--QIAERFSKGESLP 101

Query: 432 PIIYSGYFTNENDLDNFARY 491
            ++Y G        DN++++
Sbjct: 102 VLVYMGNEERNGPTDNWSQH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,009
Number of Sequences: 5004
Number of extensions: 72087
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)