Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30802
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 38 0.009
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 34 0.15
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 33 0.20
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 32 0.61
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 31 0.81
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 31 1.1
12_01_0893 + 8650967-8651311 29 3.3
11_01_0522 - 4103138-4103926 28 7.6
03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640... 28 7.6
04_01_0287 + 3804141-3804646,3805581-3805686 28 10.0
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDH 84
VGP HLE+ ISLV+D P VG M D+
Sbjct: 287 VGPADHLEEFGISLVLDHPGVGQGMSDN 314
Score = 35.9 bits (79), Expect = 0.038
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 357 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDL 473
F L +L P+S G+++L++ +P+D P + YF++ +DL
Sbjct: 409 FILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDL 447
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 357 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDL 473
F L +L P S G + L++ NP+D P + YF + DL
Sbjct: 417 FILEKILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDL 455
Score = 31.5 bits (68), Expect = 0.81
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDH 84
VGP HL I+LV++ P VG M D+
Sbjct: 294 VGPADHLRSFGITLVLNQPAVGQGMSDN 321
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 667 GDKHIG-VVDSRLRVHGVTGLRVVDASVM 750
G H+G VVD + RV GV+GLRV+D S +
Sbjct: 537 GGCHVGKVVDQQYRVIGVSGLRVIDGSTL 565
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDH 84
+GP++ L+ NIS+V+ + +VG M D+
Sbjct: 311 IGPRKELKKHNISVVLRNEHVGKGMSDN 338
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDHILVPVLL 105
VGP+ HLE I ++VD P VG + D+ + V +
Sbjct: 298 VGPQAHLEAHGIEVIVDQPMVGQGVADNPMNSVFI 332
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 667 GDKHIG-VVDSRLRVHGVTGLRVVDAS 744
G H+G VVD RV GV GLRV+D+S
Sbjct: 528 GGCHVGAVVDDDYRVFGVQGLRVIDSS 554
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 357 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLE 497
F L +L P S G + L++++P P + YF DL+ +E
Sbjct: 420 FILEKILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIE 466
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 667 GDKHIG-VVDSRLRVHGVTGLRVVDAS 744
G H+G VVD RV GV GLRVVD+S
Sbjct: 527 GGCHVGAVVDQDYRVLGVRGLRVVDSS 553
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 667 GDKHIG-VVDSRLRVHGVTGLRVVDAS 744
G H+G VVD + RV GV+G+RVVD S
Sbjct: 523 GGCHVGKVVDQQHRVLGVSGVRVVDGS 549
>12_01_0893 + 8650967-8651311
Length = 114
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -2
Query: 724 DLSHRELLTSNLPPLYVYRPWRKSYGMVLCAG*IKGITSPVLVTSKGPLPALLHL*IDHL 545
D+ + LLT L P+ V PWR + L + + + P LV K LP L + HL
Sbjct: 33 DIVRQALLTVRLVPVGVQAPWRCACWWCLTSP--RRVVPPRLVDGKPRLPQTLLFVVLHL 90
Query: 544 RLQ 536
Q
Sbjct: 91 ASQ 93
>11_01_0522 - 4103138-4103926
Length = 262
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 172 PVPLILGFVALNKSQSYPDYQVTATVSPRPHFFPC*CARKCSC*AMIYASPYRRR 336
PVP L VA + + P + SP P++ + +C + ASP R R
Sbjct: 78 PVPPALAKVATRQQLALPPCMTSPRASPSPYYHSPRLSSAAACRSAASASPCRSR 132
>03_06_0177 +
32163393-32163443,32163711-32163803,32163875-32164071,
32164157-32164262,32164391-32164537,32164637-32164756
Length = 237
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 177 HRNLIHVQQRVYVADSRRYAFHSC 106
HR L H++ + Y A++ Y H C
Sbjct: 102 HRFLFHIETKTYWANTAHYLLHGC 125
>04_01_0287 + 3804141-3804646,3805581-3805686
Length = 203
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 63 RRKHARPHISPCLTNRNGKHIFCYQQHRPFVEHG*GSGAAHF 188
+R A +++ CLT+ + + + C + F++ G A+HF
Sbjct: 115 QRPFAMHYVASCLTSDSRRRVDCLRAPTEFLDLSHGDAASHF 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,946,835
Number of Sequences: 37544
Number of extensions: 504763
Number of successful extensions: 1208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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