Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30802
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)           53   2e-07
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          30   2.5  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    29   4.4  
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)                     29   4.4  
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)                   29   5.8  
SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)                    29   5.8  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
          Length = 79

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +1

Query: 655 TCAMGDKHIGVVDSRLRVHGVTGLRVVDASVMPTITA 765
           TC MG     VVD +LRV G++GLR+VDAS+MPTIT+
Sbjct: 22  TCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITS 58


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 153  VEHG*GSGAAHFGLCRFEQIPVV-SRLSSN 239
            V H  GSG  H+GL  F Q+PVV +RL+ N
Sbjct: 5986 VVHQYGSGRVHYGLVVFGQLPVVYARLTEN 6015


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 753 WHNASIHHSKTCHTVNS*PRIYHPYMFIAHGASPTVWYCVLAKLRA*QAQYS*LPKGHCR 574
           +H    H ++TCHT+      Y+ Y  ++H    TV Y  +  L     QY  +P     
Sbjct: 349 YHTIPCHTTRTCHTIPYHTTQYYHYTNMSHN---TVSYHTILSLHEHVTQYRIIPHNPLP 405

Query: 573 H 571
           H
Sbjct: 406 H 406


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 388 DSGCSSVISENTVSCPKPASDRAMHISSLNMSICEHISTGRNEAVVKLLQLLDNLDTTG 212
           DSGC S +++   + PK  +D   ++  L +    H++     AV+    LL+ L  +G
Sbjct: 607 DSGCGSQLTD---AAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISG 662


>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 568

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 388 DSGCSSVISENTVSCPKPASDRAMHISSLNMSICEHISTGRNEAVVKLLQLLDNLDTTG 212
           DSGC S +++   + PK  +D   ++  L +    H++     AV+    LL+ L  +G
Sbjct: 38  DSGCGSQLTD---AAPKYIADHCPNLRKLRLESATHVTDEGMCAVIDKCPLLEELHISG 93


>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
          Length = 255

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 370 HCYIPNREERSL*KALIPRIHQLSTP 447
           H  + + +ERSL +ALIPR+H++S P
Sbjct: 86  HFGLASLDERSL-EALIPRVHEVSLP 110


>SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 358 NTVSCPKPASDRAMHISSLNMSICEHISTGRNEAVVKLLQLLDNLDTTG 212
           N V+    +  + +H    N+   + ++TG +E V+K+ +L D L T G
Sbjct: 219 NPVTTIDVSDKKPVHTLEYNIHRRQLVATGDSEGVIKIWRLSDELTTQG 267


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 499  TSTRHQQYTLQRIEVSSGRSKGEAMPAMALWKSRVL 606
            T++R + Y L R+E+ S   K +   A+ LW   +L
Sbjct: 1047 TTSREEDYMLVRLEIFSSWHKAKRAIAVCLWYKAIL 1082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,998,664
Number of Sequences: 59808
Number of extensions: 561888
Number of successful extensions: 1323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)