Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30802
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    38   0.032
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    38   0.032

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 38.3 bits (85), Expect = 0.032
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 655 TCAMGDKH--IGVVDSRLRVHGVTGLRVVDASVMPTITA 765
           TC MG       VVD + RV GV  LRVVDAS+MP++ +
Sbjct: 515 TCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVS 553



 Score = 35.5 bits (78), Expect = 0.23
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 387 SRGKISLKSSNPEDPPIIYSGYFTNENDLDNF 482
           S G + L+S+NP+D P+I   Y + E D+++F
Sbjct: 431 SVGWLKLRSANPQDHPVIQPNYLSTETDIEDF 462


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 38.3 bits (85), Expect = 0.032
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 655 TCAMGDKH--IGVVDSRLRVHGVTGLRVVDASVMPTITA 765
           TC MG       VVD + RV GV  LRVVDAS+MP++ +
Sbjct: 403 TCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVS 441



 Score = 35.5 bits (78), Expect = 0.23
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 387 SRGKISLKSSNPEDPPIIYSGYFTNENDLDNF 482
           S G + L+S+NP+D P+I   Y + E D+++F
Sbjct: 319 SVGWLKLRSANPQDHPVIQPNYLSTETDIEDF 350


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,025,542
Number of Sequences: 237096
Number of extensions: 2654875
Number of successful extensions: 9009
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9008
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)