Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30802
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    36   0.034
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    34   0.14 
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    34   0.14 
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    32   0.42 
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    31   0.73 
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    31   0.73 
U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical ...    29   3.9  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    28   6.8  
U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   9.0  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 1   VGPKQHLEDMNISLVVDSPNVGGNMQDHILVPV 99
           VGP  HL    I +V + P VG N+QDH+ + V
Sbjct: 316 VGPADHLRSHEIPIVANLPGVGQNLQDHLEIYV 348



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 655 TCAMG---DKHIGVVDSRLRVHGVTGLRVVDASVMPTITA 765
           TC MG   DK   V    + V+G   L+VVDASVMP+I +
Sbjct: 524 TCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVS 563


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 203 KATKPKMSGTGTLSMFNKGSML--LIAEDMLSIPVSKTGTNMWSCMFPPTLGESTTKLMF 30
           K  K    GT T++  N G+    + A     I V+K G +MW CMF       TT    
Sbjct: 175 KFIKGTSVGTATINCENSGAYCYNMTASAASLIEVTKAGCSMWRCMFAQNKCIGTTFQNI 234

Query: 29  ISSKCC 12
             S CC
Sbjct: 235 PISLCC 240


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 203 KATKPKMSGTGTLSMFNKGSML--LIAEDMLSIPVSKTGTNMWSCMFPPTLGESTTKLMF 30
           K  K    GT T++  N G+    + A     I V+K G +MW CMF       TT    
Sbjct: 25  KFIKGTSVGTATINCENSGAYCYNMTASAASLIEVTKAGCSMWRCMFAQNKCIGTTFQNI 84

Query: 29  ISSKCC 12
             S CC
Sbjct: 85  PISLCC 90


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 203 KATKPKMSGTGTLSMFNKGSML--LIAEDMLSIPVSKTGTNMWSCMFPPTLGESTTKLMF 30
           K  K    GT T++  N G+    + A     I V+K G +MW CMF       TT    
Sbjct: 201 KFIKGTSVGTATINCENSGAYCYNMTASAASLIEVTKAGCSMWRCMFAQNKCIGTTFQNI 260

Query: 29  ISSKCC 12
             S CC
Sbjct: 261 PISLCC 266


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 203 KATKPKMSGTGTLSMFNKGSML--LIAEDMLSIPVSKTGTNMWSCMFPPTLGESTTKLMF 30
           K  K    GT T++  N G+    + A     I V+K G +MW CMF       TT    
Sbjct: 175 KFIKGTSVGTATINCENSGAYCYNMTASAASLIEVTKAGCSMWRCMFAQNKCIGTTFQNI 234

Query: 29  ISSKCC 12
             S CC
Sbjct: 235 PISLCC 240


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 226 LDTTGICSKRQSPK*AAP-EPYPCSTKGLCC**QKICFPFLLVRQGLICGLAC 71
           L T+ +CS    P      +PY C  KG  C  QK+C P   ++  + C   C
Sbjct: 194 LTTSNLCSDGSPPNNTCTRDPYSCP-KGHFCTAQKVCCPSTALQSSIGCSTVC 245


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +3

Query: 213  PVVSRLSSNCNSFTTASFLPVLMCSQMLMLSDDICIALSEAGLGQET-VFSLITLLHPES 389
            PV+  + S  N+      + VL+  ++    D I  +L+      E  + S   + H E+
Sbjct: 1973 PVIQTVESFWNTTNDQEKVAVLLNEKI----DSIYSSLNTLAASMENEIISQELVRHTEN 2028

Query: 390  RGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTS 512
             GK+++K  +P +  ++ S +    +DL  F   LE  + S
Sbjct: 2029 AGKVNIKPISPRE--LVSSSFKITSSDLQQFFNVLEKMDWS 2067


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +3

Query: 213  PVVSRLSSNCNSFTTASFLPVLMCSQMLMLSDDICIALSEAGLGQET-VFSLITLLHPES 389
            PV+  + S  N+      + VL+  ++    D I  +L+      E  + S   + H E+
Sbjct: 1973 PVIQTVESFWNTTNDQEKVAVLLNEKI----DSIYSSLNTLAASMENEIISQELVRHTEN 2028

Query: 390  RGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTS 512
             GK+++K  +P +  ++ S +    +DL  F   LE  + S
Sbjct: 2029 AGKVNIKPISPRE--LVSSSFKITSSDLQQFFNVLEKMDWS 2067


>U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical
           protein T20F5.4 protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -2

Query: 415 ELFREIFPLDSGCSSVISENTVSCPKPASDRAMHISSLNMSICEHISTGRNEAVVKLLQL 236
           ++F + F L S  S + S+NT+S  + ++      S+ + +I E+ ST  N +  + + L
Sbjct: 60  DVFLDRFSLQSVDSGISSQNTISSTRSSTPEDFKTSNRHSNIYENSSTTMNYSTFRKMSL 119


>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -2

Query: 469 SFSLVK*PE*IIGGSSGLELFREIFPLDSGCSSVISENTVSCPKPASDRAMHISSLNMSI 290
           +F ++  P   +G S  +     I P    C +V+   T + P P    A   SS +MS+
Sbjct: 301 TFLIIMSPAHFLGISLSVTYCVIISPYRRVCIAVLMLITCTSPSPHPRSANSTSSSSMSV 360

Query: 289 CEHISTGRNEAV 254
            EHI    N  V
Sbjct: 361 IEHIMRRHNYRV 372


>AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical
           protein Y54G11A.3 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 285 SQM--LMLSDDICIALSEAGLGQETVFSLITLLHPESR 392
           SQM  L+LS   CI +S+ G G+   F L  LLH +++
Sbjct: 112 SQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 503 QHVINSTHFKEL-KSQVVDLKVK 568
           Q+V+N THF E+ K+QV D KV+
Sbjct: 579 QNVVNVTHFHEIVKNQVTDSKVR 601


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 173 GTLSMFNKGSMLLIAEDMLSIPVSKTGTNMWSCMFPPTLGESTTKLMFISSKCC--LGP 3
           GTLS+F K  +  + E++  I  SK G  M S      + E   KL F   KCC  LGP
Sbjct: 74  GTLSLFYKDKVYSVKENVREIVKSKYGV-MTSEPENKMVTEFIDKLQFY-EKCCGSLGP 130


>U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical
           protein F52E4.7 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 13  QHLEDMNISLVVDSPNVGGNMQDHILVPVLLTGMESISSAISNIDPLLNMDKVPVPLI 186
           Q L+  NI+ ++DS N    +   I     LTG+ES+   +   D +L   +  + LI
Sbjct: 199 QSLDGANINSMMDSENSVNQLLSSI--DAALTGVESVEKELDRCDDILAFVRNSIELI 254


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 746 TLASTTRRPVTP*TLNLESTTPICLSPMA 660
           T  +TT RP TP      +TTP+  +P+A
Sbjct: 300 TPLATTSRPTTPSPTTPRATTPLATTPLA 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,015,629
Number of Sequences: 27780
Number of extensions: 410905
Number of successful extensions: 1152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)