Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30802
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    40   4e-05
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.15 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.82 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.82 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.4  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 655 TCAMGDKH--IGVVDSRLRVHGVTGLRVVDASVMPTI 759
           T  MG  +  + VV  RL+VHG+ GLRV DASV P +
Sbjct: 548 TAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQV 584



 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 1   VGPKQHLEDMNISLVVDSPNVGGNMQDH 84
           +GPK+HL  + I +VVD P VG N+ +H
Sbjct: 335 IGPKEHLRSLGIPVVVDLPGVGENLHNH 362



 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 375 LHPESRGKISLKSSNPEDPPIIYSGYFTNEND 470
           + P S+G+I+L S +P DPP+I+S     E+D
Sbjct: 454 VQPTSKGRITLNSKDPLDPPVIWSNDLATEHD 485



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 503 QHVINSTHFKELKSQVVDLKVKQCRQWPFGSHEYWACYALNLASTQYHTVGLA 661
           Q ++N+T  ++L  +   +++KQC ++   S +YW C        + H  G A
Sbjct: 497 QKLVNTTVMRDLGVEFQKIELKQCDEFVEDSDDYWNCVIQYNTRAENHQTGTA 549


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 113 IPVSKTGTNMWSCMFPPTLGESTTKLMF 30
           +PVS   T M   ++PP +G  +T +M+
Sbjct: 831 LPVSYMSTTMAGVIYPPVIGTPSTGMMY 858


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 40   LVVDSPNVGGNMQDHILVPVLLTGMESISSAISNIDPLLNMDKVPVPLILGFVAL 204
            L V++ NV G+ Q       L    E     I++  P     KV +PLI+  VAL
Sbjct: 1570 LKVETHNVAGSNQAEFTFVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATVAL 1624



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 613  TSPVLVTSKGPLPALLHL*IDHLRLQFFEVCTVDDVLKFS 494
            +S +L+T   PLP L H  I    + + E  + +    FS
Sbjct: 1020 SSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFS 1059


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 40   LVVDSPNVGGNMQDHILVPVLLTGMESISSAISNIDPLLNMDKVPVPLILGFVAL 204
            L V++ NV G+ Q       L    E     I++  P     KV +PLI+  VAL
Sbjct: 1566 LKVETHNVAGSNQAEFTFVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATVAL 1620



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 613  TSPVLVTSKGPLPALLHL*IDHLRLQFFEVCTVDDVLKFS 494
            +S +L+T   PLP L H  I    + + E  + +    FS
Sbjct: 1016 SSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFS 1055


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 231 SSNCNSFTTASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLIT 371
           + NC+  T+A  + + MC ++ +L   +   +      Q  VF L T
Sbjct: 113 NENCSGITSAYKIEIDMCDRLWVLDSGLINNVRSVCPPQLLVFDLNT 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,747
Number of Sequences: 438
Number of extensions: 5052
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)