Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30802
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 37 0.014
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 36 0.042
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 34 0.096
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 34 0.096
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 33 0.22
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 33 0.29
At5g44790.1 68418.m05491 copper-exporting ATPase / responsive-to... 31 0.68
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 31 0.90
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 30 2.1
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 30 2.1
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 30 2.1
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 29 2.7
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 29 3.6
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.6
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 29 4.8
At4g20870.1 68417.m03027 fatty acid hydroxylase, putative simila... 29 4.8
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 28 8.3
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a... 28 8.3
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 357 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLE 497
F L ++ P S G + LK+ NP+D PI+ YF + +DL R ++
Sbjct: 401 FLLEKVMGPLSTGHLELKTRNPKDNPIVTFNYFQHPDDLKRCVRGIQ 447
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDH 84
VGP L+ NI++V+D P+VG M D+
Sbjct: 291 VGPSAQLQAQNITVVMDQPHVGQGMYDN 318
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 35.5 bits (78), Expect = 0.042
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 381 PESRGKISLKSSNPEDPPIIYSGYFTNENDLD---NFARYLENFNTSSTV 521
P+S+G++ L S+NP + P + Y N+ DLD +L++ S TV
Sbjct: 344 PKSKGRLKLNSTNPRENPSVKFNYLENKADLDACLEMVLHLQHVARSETV 393
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDHILVPVLL 105
+GP+ HL+D +I ++V+ VG M D+ + +L+
Sbjct: 262 IGPENHLKDFDIPVIVNLKEVGRKMSDNPAISLLV 296
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 34.3 bits (75), Expect = 0.096
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 381 PESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTSSTVHTSK 533
P SRG + L+++NP+D P + YF + DL+ + +E +T V SK
Sbjct: 412 PLSRGHLELRNTNPDDNPSVTFNYFKDPEDLN---KCVEGLSTIIKVIDSK 459
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 381 PESRGKISLKSSNPEDPPIIYSGYFTNENDLD---NFARYLENFNTSSTV 521
P+S+G++ L ++NP + P + Y N+ DLD +L++ S TV
Sbjct: 364 PKSKGRLKLNNTNPRENPSVTFNYLENKADLDACQEMVLHLQHVARSKTV 413
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 1 VGPKQHLEDMNISLVVDSPNVGGNMQDHILVPVLL 105
+GP+ HL D +I ++V+ VG M D+ + +L+
Sbjct: 282 IGPENHLNDFDIPVIVNLKEVGKQMSDNPAISLLV 316
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +3
Query: 357 FSLITLLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTSSTVHTS 530
F L L +P SRG +SL ++N +D P + YF + DL R +E S V TS
Sbjct: 423 FILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQ---RCVEAIRLVSKVVTS 477
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 381 PESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTSSTVHTSK 533
P SRG + L+++NP+D P + Y+ DL +E NT V SK
Sbjct: 421 PISRGHLELRNTNPDDNPSVRFNYYQEPEDLQ---ICVEGINTIIKVINSK 468
>At5g44790.1 68418.m05491 copper-exporting ATPase /
responsive-to-antagonist 1 / copper-transporting ATPase
(RAN1) identical to SP|Q9S7J8
Length = 1001
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 22 EDMNISLVVDSPNVGG--NMQDHILVPVLLTGMESISSAISNIDPLLNMDKVPVPLILGF 195
E + +S VDSP +GG NM + + G +++ S I ++ M K P+ +
Sbjct: 499 ESVPVSKEVDSPVIGGTINMHGALHMKATKVGSDAVLSQIISLVETAQMSKAPIQKFADY 558
Query: 196 VA 201
VA
Sbjct: 559 VA 560
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 381 PESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYL 494
P S+G + L+++NP D P + Y+ DL+ + L
Sbjct: 437 PASKGHMKLRNTNPRDNPSVTFNYYQEPEDLNKCVKGL 474
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 355 TVSCPKPASDRAMHISSLNMSICEHISTG 269
T+ C KP D+ M I+SL + E I G
Sbjct: 19 TIDCSKPVDDKIMEIASLEKFLQERIKVG 47
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 355 TVSCPKPASDRAMHISSLNMSICEHISTG 269
T+ C KP D+ M I+SL + E I G
Sbjct: 19 TIDCSKPVDDKIMEIASLEKFLQERIKVG 47
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 355 TVSCPKPASDRAMHISSLNMSICEHISTG 269
T+ C KP D+ M I+SL + E I G
Sbjct: 19 TIDCSKPVDDKIMEIASLEKFLQERIKVG 47
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 942
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 273 VLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRG 395
V + Q+ L +++ I +++ GLG + ++T L PE+RG
Sbjct: 310 VYILDQVRALEEELLIRINQQGLGFKPQILVVTRLIPEARG 350
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 372 LLHPESRGKISLKSSNPEDPPIIYSGYFTNENDLDNFARYLENFNTSS 515
LL ES + ++++N EDP + + TN +DL+N + + SS
Sbjct: 245 LLDAESSNLVGVENTNSEDPESLLNTEPTNVSDLENHVNSQKEDSLSS 292
>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein Pfam profile PF00564: PB1
domain
Length = 720
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 214 QSYPDYQVTATVSPRPHFFP 273
Q YP Y VTA V PRP+ P
Sbjct: 552 QPYPVYYVTAPVPPRPYSMP 571
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 198 DKAQNERHRNLIHVQQRVYVADSRR 124
D+ + E HR+ H+Q R Y++ SRR
Sbjct: 835 DEDEKEVHRDTAHIQTRPYISISRR 859
>At4g20870.1 68417.m03027 fatty acid hydroxylase, putative similar
to fatty acid hydroxylase Fah1p GB:AF021804 GI:2736147
from [Arabidopsis thaliana]
Length = 237
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 177 HRNLIHVQQRVYVADSRRYAFHSC 106
HR L H+Q + Y A++ Y H C
Sbjct: 102 HRFLFHIQTKSYWANTAHYLLHGC 125
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 385 SGCSSVISENTVSCPKPASDRAMHISSLNMSICEHISTGRNEAVVK-LLQLLD 230
SG V+S + P ++ A ++ L +S C+ I N VVK L+QLL+
Sbjct: 188 SGVDIVVSLLSSDNPNSQANAASLLARLVLSFCDSIQKILNSGVVKSLIQLLE 240
>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
GI:3172025, GI:3172044; identical to cDNA putative
aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
Length = 1337
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 185 MSGTGTLSMFNKG--SMLLIAEDMLSIPVSKTGTNMWSCMFPPTLGESTTKLMFISSKCC 12
++ ++ M N G L + E ++S P+ T T + P + STT L+F + +
Sbjct: 364 LAADASVHMINAGRHEKLRMGEYLVSPPILDTKTVLLKVHIPRWIASSTTGLLFETYRAA 423
Query: 11 LGP 3
L P
Sbjct: 424 LRP 426
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,775
Number of Sequences: 28952
Number of extensions: 390706
Number of successful extensions: 950
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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